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      Medicago truncatula Gene Expression Atlas  

The team members of the Medicago truncatula Gene Atlas project and the Medicago truncatula Transcriptome Investigator would like to acknowledge the contributions of the following researchers in their listed publications, without which the web server would not be so successful. Lists below are not ordered.

Medicago truncatula Gene Expression Data
  • Benedito et al. (2008) Benedito VA, Torres-Jerez I, Murray JD, Andriankaja A, Allen S, Kakar K, Wandrey M, Verdier J, Zuber H, Ott T, Moreau S, Niebel A, Frickey T, Weiller G, He J, Dai X, Zhao PX, Tang Y, Udvardi MK. "A gene expression atlas of the model legume Medicago truncatula". The Plant J.. 2008, 55(3):504--513.
  • Naoumkina et al. (2007) Naoumkina M, Farag MA, Sumner LW, Tang Y, Liu CJ, Dixon RA. "Inaugural Article: Different mechanisms for phytoalexin induction by pathogen and wound signals in Medicago truncatula". PNAS. 2007, 104(46):17909-15.
  • Imin et al. (2008) Imin N, Goffard N, Nizamidin M, Rolfe BG. "Genome-wide transcriptional analysis of super-embryogenic Medicago truncatula explant cultures". BMC Plant Biol. 2008, 8:110.
  • Holmes et al. (2008) Holmes P, Goffard N, Weiller GF, Rolfe BG, Imin N. "Transcriptional profiling of Medicago truncatula meristematic root cells". BMC Plant Biol. 2008, 8:21.
  • Ruffel et al. (2008) Ruffel S, Freixes S, Balzergue S, Tillard P, Jeudy C, Martin-Magniette ML, van der Merwe MJ, Kakar K, Gouzy J, Fernie AR, Udvardi M, Salon C, Gojon A, Lepetit M. "Systemic signaling of the plant nitrogen status triggers specific transcriptome responses depending on the nitrogen source in Medicago truncatula". Plant Physiol. 2008, 146(4):2020-35.
  • Uppalapati et al. (2009) Uppalapati SR, Marek SM, Lee HK, Nakashima J, Tang Y, Sledge MK, Dixon RA, Mysore KS. "Global gene expression profiling during Medicago truncatula-Phymatotrichopsis omnivora interaction reveals a role for jasmonic acid, ethylene, and the flavonoid pathway in disease development". Mol Plant Microbe Interact. 2009, 22(1):7-17.
  • Gomez et al. (2009) Gomez SK, Javot H, Deewatthanawong P, Torres-Jerez I, Tang Y, Blancaflor EB, Udvardi MK, Harrison MJ. "Medicago truncatula and Glomus intraradices gene expression in cortical cells harboring arbuscules in the arbuscular mycorrhizal symbiosis". BMC Plant Biol. 2009, 9:10.
  • Pang et al. (2008) Pang Y, Peel GJ, Sharma SB, Tang Y, Dixon RA. "A transcript profiling approach reveals an epicatechin-specific glucosyltransferase expressed in the seed coat of Medicago truncatula". PNAS 2008, 105(37):14210-5.
  • Naoumkina et al. (2008) Naoumkina M, Vaghchhipawala S, Tang Y, Ben Y, Powell RJ, Dixon RA. "Metabolic and genetic perturbations accompany the modification of galactomannan in seeds of Medicago truncatula expressing mannan synthase from guar (Cyamopsis tetragonoloba L.).". Plant Biotechnol J. 2008, 6(6):619-31.
Medicago truncatula GeneChip and Genome Annotations
  • Goffard & Weiller (2007) Goffard N, Weiller G. "GeneBins: a database for classifying gene expression data, with application to plant genome arrays". BMC Bioinformatics 2007, 8:87.
  • Urbanczyk-Wochniak & Sumner (2007) Urbanczyk-Wochniak E., Sumner L.W. "MedicCyc: a biochemical pathway database for Medicago truncatula". Bioinformatics 2007, 23:1418-23.
  • Udvardi et al. (2007) Udvardi MK, Kakar K, Wandrey M, Montanari O, Murray J, Andriankaja A, Zhang JY, Benedito V, Hofer JM, Chueng F, Town CD. "Legume transcription factors: global regulators of plant development and response to the environment". Plant Physiol. 2007, 144(2):538-49.
Work Published Online and Unpublished Work
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