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      Medicago truncatula Gene Expression Atlas  
 
     
Co-expression Analysis

Return the highly correlated gene expression profiles according to provided probeset ID or gene expression profile. Correlation measurement can be based on either Pearson's Correlation Coefficient (a.k.a Pearson Linear Correlation) which is around mean, or Cosine Correlation which is around zero.

Query probeset ID:
OR, Query expression profile:

(Example)

(Clear Example)
Input numeric values corresponding to the experiments selected below, and in the same order. Values must be space-delimited (white space, tab, or carriage return).
Calculation based on:
Select all Clear selections
  1: Leaf   2: Leaf CYO716A12
  3: Leaf CYO716A12 R108   4: Leaf MtLAP1
  5: Leaf GUS-ox   6: Leaf IRG1 R108
  7: Leaf irg1-1   8: Leaf irg1-2
  9: Leaf irg1-5   10: Leaf 2HA 1wk
  11: Leaf 2HA 1wk NAA   12: Leaf 2HA 2wk NAA BAP
  13: Leaf Jemalong 2wk NAA BAP   14: Petiole
  15: Vegetative Buds   16: Shoot R108
  17: Shoot stenofolia   18: Shoot 10wk (41dpi)
  19: Shoot drought 2d   20: Shoot drought 3d
  21: Shoot drought 4d   22: Shoot drought 7d
  23: Shoot drought 10d   24: Shoot drought 14d
  25: Shoot drought 14d rewatered 1d   26: Shoot watered 2d
  27: Shoot watered 4d   28: Shoot 5wk SuffNO3 NO3PAT
  29: Shoot 5wk LimtNO3 NO3PAE   30: Shoot 5wk SuffNH4 NH4PAT
  31: Shoot 5wk LimtNH4 NH4PAE   32: Shoot 5wk SuffN2 N2PAT
  33: Shoot 5wk LimtN2 N2PAE   34: Hypocotyl A17 10C 35C-day1
  35: Hypocotyl A17 10C 35C-day2   36: Hypocotyl F83 10C 35C-day1
  37: Hypocotyl F83 10C 35C-day2   38: Hypocotyl A17 10C 50C-day1
  39: Hypocotyl A17 10C 50C-day2   40: Hypocotyl F83 10C 50C-day1
  41: Hypocotyl F83 10C 50C-day2   42: Hypocotyl A17 10C 100C-day1
  43: Hypocotyl A17 10C 100C-day2   44: Hypocotyl F83 10C 100C-day1
  45: Hypocotyl F83 10C 100C-day2   46: Hypocotyl A17 20C 35C-day1
  47: Hypocotyl A17 20C 35C-day2   48: Hypocotyl F83 20C 35C-day1
  49: Hypocotyl F83 20C 35C-day2   50: Hypocotyl A17 20C 50C-day1
  51: Hypocotyl A17 20C 50C-day2   52: Hypocotyl F83 20C 50C-day1
  53: Hypocotyl F83 20C 50C-day2   54: Hypocotyl A17 20C 100C-day1
  55: Hypocotyl A17 20C 100C-day2   56: Hypocotyl F83 20C 100C-day1
  57: Hypocotyl F83 20C 100C-day2   58: Stem
  59: Stem internode1   60: Stem internode2
  61: Stem internode4   62: Stem internode6
  63: Stem internode8   64: Stem WT-STP R108
  65: Stem stp   66: Stem R108-NStem1-2
  67: Stem nStem1-2   68: Stem R108-NStem1-P
  69: Stem nStem1-p   70: Flower
  71: Flower 12wk (56dpi)   72: Pod
  73: Pod 12wk (56dpi)   74: Seed Coat
  75: Seed 10dap   76: Seed 12dap
  77: Seed 16dap   78: Seed 20dap
  79: Seed 24dap   80: Seed 36dap
  81: Seeds transgenic R108 GuarMannSynt   82: Seeds transgenic R108 (control)
  83: Root   84: Root R108
  85: Root A17 control   86: Root DMI3 control
  87: Root meristem   88: Root 3mm tip
  89: Root tip   90: Root 1cm adj tip
  91: Root (denodulated) 28dpi   92: Root Whole
  93: Root Border cell   94: Root A17 mock
  95: Root nfp-2 mock   96: Root A17 1dpi (Aphanomyes)
  97: Root nfp-2 1dpi (Aphanomyes)   98: Root 0dpi
  99: Root 3dpi (control)   100: Root 6dpi (control)
  101: Root 10dpi (control)   102: Root 14dpi (control)
  103: Root 20dpi (control)   104: Root Tip A17 0hpi (Ralstonia)
  105: Root Tip A17 12hpi (Ralstonia)   106: Root Tip A17 72hpi (Ralstonia)
  107: Root Tip sickle 0hpi (Ralstonia)   108: Root Tip sickle 12hpi (Ralstonia)
  109: Root Tip sickle 72hpi (Ralstonia)   110: Root Tip F83005.5 0hpi (Ralstonia)
  111: Root Tip F83005.5 12hpi (Ralstonia)   112: Root Tip F83005.5 72hpi (Ralstonia)
  113: Root WT NF control 6h   114: Root WT NF control 24h
  115: Root WT MF control 6h   116: Root WT MF control 24h
  117: Root WT Nod-LCOs 6h   118: Root WT Nod-LCOs 24h
  119: Root WT nsMyc-LCOs 6h   120: Root WT nsMyc-LCOs 24h
  121: Root WT sMyc-LCOs 6h   122: Root WT sMyc-LCOs 24h
  123: Root WT s-nsMyc-LCOs 6h   124: Root WT s-nsMyc-LCOs 24h
  125: Root DMI3 MF control 6h   126: Root DMI3 nsMyc-LCOs 6h
  127: Root DMI3 sMyc-LCOs 6h   128: Root DMI3 s-nsMyc-LCOs 6h
  129: Root NFP MF control 6h   130: Root NFP nsMyc-LCOs 6h
  131: Root NFP sMyc-LCOs 6h   132: Root NFP s-nsMyc-LCOs 6h
  133: Root Myc control   134: Root Myc infection
  135: Root Myc 3wk infection   136: Root LCM arbuscular
  137: Root LCM cortical   138: Root LCM adjacent
  139: Root non-Myc (control) 6wk 20 uM P   140: Root non-Myc 6wk 2 mM P
  141: Root (28dpi) Myc (G. intraradices) 6wk 20 uM P   142: Root (28dpi) Myc (G. mosseae) 6wk 20 uM P
  143: HairyRoot WT Myc control   144: HairyRoot WT Myc Infected
  145: HairyRoot DMI3 Myc control   146: HairyRoot DMI3 Myc Infected
  147: Root A17 inoculated with Gigaspora (early contact)   148: Root DMI3 inoculated with Gigaspora (early contact)
  149: Root A17 5d seedling - N-starved   150: Root A17 5d seedling - 24h Mock
  151: Root A17 5d seedling - 24h Nod factor   152: Root A17 5d seedling - 1dpi Sinorhizobium
  153: Root A17 5d seedling - 3dpi Sinorhizobium   154: Root efd 5d seedling - N-starved
  155: Root ya1/hap2 5d seedling - (T0) non-inoculated (N-starved)   156: Root ya1/hap2 5d seedling - 24h Mock
  157: Root YA1/HAP2 5d seedling - 24h Nod factor   158: Root ya1/hap2 5d seedling - 1dpi Sinorhizobium
  159: Root ya1/hap2 5d seedling - 3dpi Sinorhizobium   160: Root sunn-2 skl 5d seedling - 4h Mock
  161: Root sunn-2 skl 5d seedling - 4h Nod factor   162: Root sunn-2 skl 5d seedling - 24h Mock
  163: Root sunn-2 skl 5d seedling - 24h Nod factor   164: A17 SuffN
  165: A17 LimN   166: A17 rhizobia SuffN
  167: A17 rhizobia LimN LimN2   168: sunn SuffN
  169: sunn LimN   170: Root J5 10mM KNO3
  171: Root J5 1mM KNO3   172: Root tr185 10mM KNO3
  173: Root tr185 1mM KNO3   174: Root Nod 5wk SuffN2 N2S
  175: Root Nod 5wk LimtN2 N2C   176: Root 5wk SuffNH4 NH4S
  177: Root 5wk LimtNH4 NH4C   178: Root 5wk SuffNO3 NO3S
  179: Root 5wk LimtNO3 NO3C   180: Root 5wk NoNO3 NO3ONE
  181: Root Macrophomina infected 0hpi   182: Root Macrophomina infected 24hpi
  183: Root Macrophomina infected 36hpi   184: Root Macrophomina infected 48hpi
  185: Root A17 buffer 1d   186: Root A17 buffer 7d
  187: Root A17 NPA 1d   188: Root A17 NPA 7d
  189: Root A17 TIBA 7d   190: Root A17 TIBA 1d
  191: GiantCell   192: GallTissue-surrounding GiantCell (-)
  193: Root transgenic GUS (TT2 control)   194: Root transgenic TT2
  195: Root CRR 0hpi   196: Root CRR 72hpi
  197: Root CRR 96hpi   198: Root 2d Sdl culture 180mM NaCl 0h
  199: Root 2d Sdl culture 180mM NaCl 6h   200: Root 2d Sdl culture 180mM NaCl 24h
  201: Root 2d Sdl culture 180mM NaCl 48h   202: Root 2wk Sdl Hydroponic 200mM NaCl 0h
  203: Root 2wk Sdl Hydroponic 200mM NaCl 1h   204: Root 2wk Sdl Hydroponic 200mM NaCl 2h
  205: Root 2wk Sdl Hydroponic 200mM NaCl 5h   206: Root 2wk Sdl Hydroponic 200mM NaCl 10h
  207: Root 2wk Sdl Hydroponic 200mM NaCl 24h   208: Root drought 2d
  209: Root drought 3d   210: Root drought 4d
  211: Root drought 7d   212: Root drought 10d
  213: Root drought 14d   214: Root drought 14d rewatered 1d
  215: Root watered d2   216: Root watered 4d
  217: Nod 3dpi   218: Nod 4dpi
  219: Nod 6dpi   220: Nodule A17 (6dpi)
  221: Nodule efd (6dpi)   222: Nodule ya1/hap2 (6dpi)
  223: Nod 10dpi   224: Nod 14dpi
  225: Nod 14dpi C   226: Nod 10dpi C
  227: Nod 20dpi   228: Nodule (20d)
  229: Nod 28dpi   230: Nod R108
  231: Nod zone2   232: Nod NOOT NF2717
  233: Nod NOOT TNK507   234: Nod 16dpi+NO3
  235: Nod phosphinothricin 0h   236: Nod phosphinothricin 4h
  237: Nod phosphinothricin 8h   238: Nod phosphinothricin 24h
  239: Nodule (20d) - 4h PPT   240: Nodule (20d) - 8h PPT
  241: Nodule (20d) - 24h PPT   242: Nod Naut1 SalsC
  243: Nod Naut1 SalsB   244: Nod Sals4 SalsB
  245: Nod Sals4 SalsC   246: CS YE 0h control
  247: CS YE 2h control   248: CS YE 2h
  249: CS YE 24h control   250: CS YE 24h
  251: CS MJ 2h control   252: CS MJ 2h
  253: CS MJ 24h control   254: CS MJ 24h
  255: root hairs 1 dpi Sm1021 nodD1ABC deletion mutant   256: root hairs 3 dpi Sm1021 nodD1ABC deletion mutant
  257: root hairs 5 dpi Sm1021 nodD1ABC deletion mutant   258: root hairs 1 dpi Sm1021
  259: root hairs 3 dpi Sm1021   260: root hairs 5 dpi Sm1021
  261: root hairs 5 dpi Sm1021 nodD1ABC deletion mutant sickle-1   262: root hairs 5 dpi Sm1021 sickle
  263: root hairs 24h Nod factor control   264: root hairs 24h 10 nM Nod factors
  265: Meristem cells from Medicago truncatula root nodules   266: Distal infection zone cells from Medicago truncatula root nodules
  267: Proximal infection zone cells from Medicago truncatula root nodules   268: Infected cells from Medicago truncatula root nodules
  269: Uninfected cells from Medicago truncatula root nodules   270: Epidermal and adjacent cortical cells from areas with visible appressoria
  271: Epidermal and cortical cells from non-colonized areas of mycorrhizal roots   272: Cortical cells from mycorrhizal roots containing arbuscules
  273: Cortical cells from mycorrhizal roots containing fungal hyphae   274: Epidermal cells from root areas containing mature mycorrhizal structures
Limit probesets in:
Correlation based on:
Correlation threshold:
(-1.0 -- 1.0)
Max. # of profiles to return:
 




 
         
       
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