Medicago truncatula Gene Expression Atlas
      Mt Gene Expression Atlas | Noble Foundation | Plant Biology 
 
     
Differential Expression Analysis

Currently, fold change analaysis is available for differential expressions analysis. More analysis modules will be available soon.

Reference experiment / slide:
Denominator of the fold calculation, B
  1: A17 LimN   2: A17 rhizobia LimN LimN2
  3: A17 rhizobia SuffN   4: A17 SuffN
  5: CS MJ 24h   6: CS MJ 24h control
  7: CS MJ 2h   8: CS MJ 2h control
  9: CS YE 0h control   10: CS YE 24h
  11: CS YE 24h control   12: CS YE 2h
  13: CS YE 2h control   14: Flower
  15: GallTissue-surrounding GiantCell (-)   16: GiantCell
  17: HairyRoot DMI3 Myc control   18: HairyRoot DMI3 Myc Infected
  19: HairyRoot WT Myc control   20: HairyRoot WT Myc Infected
  21: Hypocotyl A17 10C 100C-day1   22: Hypocotyl A17 10C 100C-day2
  23: Hypocotyl A17 10C 35C-day1   24: Hypocotyl A17 10C 35C-day2
  25: Hypocotyl A17 10C 50C-day1   26: Hypocotyl A17 10C 50C-day2
  27: Hypocotyl A17 20C 100C-day1   28: Hypocotyl A17 20C 100C-day2
  29: Hypocotyl A17 20C 35C-day1   30: Hypocotyl A17 20C 35C-day2
  31: Hypocotyl A17 20C 50C-day1   32: Hypocotyl A17 20C 50C-day2
  33: Hypocotyl F83 10C 100C-day1   34: Hypocotyl F83 10C 100C-day2
  35: Hypocotyl F83 10C 35C-day1   36: Hypocotyl F83 10C 35C-day2
  37: Hypocotyl F83 10C 50C-day1   38: Hypocotyl F83 10C 50C-day2
  39: Hypocotyl F83 20C 100C-day1   40: Hypocotyl F83 20C 100C-day2
  41: Hypocotyl F83 20C 35C-day1   42: Hypocotyl F83 20C 35C-day2
  43: Hypocotyl F83 20C 50C-day1   44: Hypocotyl F83 20C 50C-day2
  45: Leaf GUS-ox   46: Leaf MtLAP1
  47: Leaf   48: Leaf 2HA 1wk
  49: Leaf 2HA 1wk NAA   50: Leaf 2HA 2wk NAA BAP
  51: Leaf CYO716A12   52: Leaf CYO716A12 R108
  53: Leaf IRG1 R108   54: Leaf irg1-1
  55: Leaf irg1-2   56: Leaf irg1-5
  57: Leaf Jemalong 2wk NAA BAP   58: Nod 10dpi
  59: Nod 14dpi   60: Nod 16dpi+NO3
  61: Nod 28dpi   62: Nod 4dpi
  63: Nod Naut1 SalsB   64: Nod Naut1 SalsC
  65: Nod phosphinothricin 0h   66: Nod phosphinothricin 24h
  67: Nod phosphinothricin 4h   68: Nod phosphinothricin 8h
  69: Nod R108   70: Nod Sals4 SalsB
  71: Nod Sals4 SalsC   72: Nod zone2
  73: Nod NOOT NF2717   74: Nod NOOT TNK507
  75: Petiole   76: Pod
  77: Root   78: Root 0dpi
  79: Root 2d Sdl culture 180mM NaCl 0h   80: Root 2d Sdl culture 180mM NaCl 6h
  81: Root 2d Sdl culture 180mM NaCl 24h   82: Root 2d Sdl culture 180mM NaCl 48h
  83: Root 1cm adj tip   84: Root 2wk Sdl Hydroponic 200mM NaCl 0h
  85: Root 2wk Sdl Hydroponic 200mM NaCl 10h   86: Root 2wk Sdl Hydroponic 200mM NaCl 1h
  87: Root 2wk Sdl Hydroponic 200mM NaCl 24h   88: Root 2wk Sdl Hydroponic 200mM NaCl 2h
  89: Root 2wk Sdl Hydroponic 200mM NaCl 5h   90: Root 3mm tip
  91: Root 5wk LimtNH4 NH4C   92: Root 5wk LimtNO3 NO3C
  93: Root 5wk NoNO3 NO3ONE   94: Root 5wk SuffNH4 NH4S
  95: Root 5wk SuffNO3 NO3S   96: Root A17 1dpi (Aphanomyes)
  97: Root A17 buffer 1d   98: Root A17 buffer 7d
  99: Root A17 mock   100: Root A17 NPA 1d
  101: Root A17 NPA 7d   102: Root A17 TIBA 1d
  103: Root A17 TIBA 7d   104: Root Border cell
  105: Root CRR 0hpi   106: Root CRR 72hpi
  107: Root CRR 96hpi   108: Root (denodulated) 28dpi
  109: Root DMI3 MF control 6h   110: Root DMI3 nsMyc-LCOs 6h
  111: Root DMI3 sMyc-LCOs 6h   112: Root DMI3 s-nsMyc-LCOs 6h
  113: Root drought 10d   114: Root drought 14d
  115: Root drought 14d rewatered 1d   116: Root drought 2d
  117: Root drought 3d   118: Root drought 4d
  119: Root drought 7d   120: Root J5 10mM KNO3
  121: Root J5 1mM KNO3   122: Root LCM adjacent
  123: Root LCM arbuscular   124: Root LCM cortical
  125: Root Macrophomina infected 0hpi   126: Root Macrophomina infected 24hpi
  127: Root Macrophomina infected 36hpi   128: Root Macrophomina infected 48hpi
  129: Root Myc control   130: Root Myc infection
  131: Root Myc 3wk infection   132: Root NFP MF control 6h
  133: Root NFP nsMyc-LCOs 6h   134: Root NFP sMyc-LCOs 6h
  135: Root NFP s-nsMyc-LCOs 6h   136: Root nfp-2 1dpi (Aphanomyes)
  137: Root nfp-2 mock   138: Root Nod 5wk LimtN2 N2C
  139: Root Nod 5wk SuffN2 N2S   140: Root R108
  141: Root tip   142: Root Tip A17 0hpi (Ralstonia)
  143: Root Tip A17 12hpi (Ralstonia)   144: Root Tip A17 72hpi (Ralstonia)
  145: Root Tip F83005.5 0hpi (Ralstonia)   146: Root Tip F83005.5 12hpi (Ralstonia)
  147: Root Tip F83005.5 72hpi (Ralstonia)   148: Root Tip sickle 0hpi (Ralstonia)
  149: Root Tip sickle 12hpi (Ralstonia)   150: Root Tip sickle 72hpi (Ralstonia)
  151: Root tr185 10mM KNO3   152: Root tr185 1mM KNO3
  153: Root transgenic GUS (TT2 control)   154: Root transgenic TT2
  155: Root watered 4d   156: Root watered d2
  157: Root Whole   158: Root WT MF control 24h
  159: Root WT MF control 6h   160: Root WT NF control 24h
  161: Root WT NF control 6h   162: Root WT Nod-LCOs 24h
  163: Root WT Nod-LCOs 6h   164: Root WT nsMyc-LCOs 24h
  165: Root WT nsMyc-LCOs 6h   166: Root WT sMyc-LCOs 24h
  167: Root WT sMyc-LCOs 6h   168: Root WT s-nsMyc-LCOs 24h
  169: Root WT s-nsMyc-LCOs 6h   170: Seed 10dap
  171: Seed 12dap   172: Seed 16dap
  173: Seed 20dap   174: Seed 24dap
  175: Seed 36dap   176: Seed Coat
  177: Seeds transgenic R108 (control)   178: Seeds transgenic R108 GuarMannSynt
  179: Shoot 5wk LimtN2 N2PAE   180: Shoot 5wk LimtNH4 NH4PAE
  181: Shoot 5wk LimtNO3 NO3PAE   182: Shoot 5wk SuffN2 N2PAT
  183: Shoot 5wk SuffNH4 NH4PAT   184: Shoot 5wk SuffNO3 NO3PAT
  185: Shoot drought 10d   186: Shoot drought 14d
  187: Shoot drought 14d rewatered 1d   188: Shoot drought 2d
  189: Shoot drought 3d   190: Shoot drought 4d
  191: Shoot drought 7d   192: Shoot R108
  193: Shoot stenofolia   194: Shoot watered 4d
  195: Shoot watered 2d   196: Stem
  197: Stem internode1   198: Stem internode2
  199: Stem internode4   200: Stem internode6
  201: Stem internode8   202: Stem stp
  203: Stem WT-STP R108   204: Stem nStem1-2
  205: Stem nStem1-p   206: Stem R108-NStem1-2
  207: Stem R108-NStem1-P   208: sunn LimN
  209: sunn SuffN   210: Vegetative Buds
  211: Nod 3dpi   212: Nod 6dpi
  213: Nod 10dpi C   214: Nod 14dpi C
  215: Nod 20dpi   216: Root 3dpi (control)
  217: Root 6dpi (control)   218: Root 10dpi (control)
  219: Root 14dpi (control)   220: Root 20dpi (control)
  221: Root meristem   222: Root (28dpi) Myc (G. intraradices) 6wk 20 uM P
  223: Root (28dpi) Myc (G. mosseae) 6wk 20 uM P   224: Root non-Myc (control) 6wk 20 uM P
  225: Root non-Myc 6wk 2 mM P   226: Shoot 10wk (41dpi)
  227: Flower 12wk (56dpi)   228: Pod 12wk (56dpi)
  229: Nodule (20d)   230: Nodule (20d) - 4h PPT
  231: Nodule (20d) - 8h PPT   232: Nodule (20d) - 24h PPT
  233: Root sunn-2 skl 5d seedling - 4h Nod factor   234: Root sunn-2 skl 5d seedling - 24h Nod factor
  235: Root sunn-2 skl 5d seedling - 4h Mock   236: Root sunn-2 skl 5d seedling - 24h Mock
  237: Root A17 5d seedling - 24h Nod factor   238: Root A17 5d seedling - 24h Mock
  239: Root YA1/HAP2 5d seedling - 24h Nod factor   240: Root ya1/hap2 5d seedling - 24h Mock
  241: Root ya1/hap2 5d seedling - (T0) non-inoculated (N-starved)   242: Root efd 5d seedling - N-starved
  243: Root A17 5d seedling - N-starved   244: Nodule A17 (6dpi)
  245: Nodule ya1/hap2 (6dpi)   246: Nodule efd (6dpi)
  247: Root A17 5d seedling - 1dpi Sinorhizobium   248: Root ya1/hap2 5d seedling - 1dpi Sinorhizobium
  249: Root A17 5d seedling - 3dpi Sinorhizobium   250: Root ya1/hap2 5d seedling - 3dpi Sinorhizobium
  251: Root A17 control   252: Root DMI3 control
  253: Root A17 inoculated with Gigaspora (early contact)   254: Root DMI3 inoculated with Gigaspora (early contact)
  255: root hairs 1 dpi Sm1021 nodD1ABC deletion mutant   256: root hairs 3 dpi Sm1021 nodD1ABC deletion mutant
  257: root hairs 5 dpi Sm1021 nodD1ABC deletion mutant   258: root hairs 1 dpi Sm1021
  259: root hairs 3 dpi Sm1021   260: root hairs 5 dpi Sm1021
  261: root hairs 5 dpi Sm1021 nodD1ABC deletion mutant sickle-1   262: root hairs 5 dpi Sm1021 sickle
  263: root hairs 5 dpi Sm1021 ern1   264: root hairs 5 dpi Sm1021 nf-ya1 (hap2.1)
  265: root hairs 5 dpi Sm1021 nin   266: root hairs 24h Nod factor control
  267: root hairs 24h 10 nM Nod factors   268: Epidermal cells from root areas containing mature mycorrhizal structures
  269: Cortical cells from mycorrhizal roots containing fungal hyphae   270: Cortical cells from mycorrhizal roots containing arbuscules
  271: Epidermal and cortical cells from non-colonized areas of mycorrhizal roots   272: Uninfected cells from Medicago truncatula root nodules
  273: Infected cells from Medicago truncatula root nodules   274: Epidermal and adjacent cortical cells from areas with visible appressoria
  275: Proximal infection zone cells from Medicago truncatula root nodules   276: Meristem cells from Medicago truncatula root nodules
  277: Distal infection zone cells from Medicago truncatula root nodules
Target experiments / slides:
Numerators of the fold calculation, A.

Fold change is calculated as A/B
Select all Clear selections
  1: A17 LimN   2: A17 rhizobia LimN LimN2
  3: A17 rhizobia SuffN   4: A17 SuffN
  5: CS MJ 24h   6: CS MJ 24h control
  7: CS MJ 2h   8: CS MJ 2h control
  9: CS YE 0h control   10: CS YE 24h
  11: CS YE 24h control   12: CS YE 2h
  13: CS YE 2h control   14: Flower
  15: GallTissue-surrounding GiantCell (-)   16: GiantCell
  17: HairyRoot DMI3 Myc control   18: HairyRoot DMI3 Myc Infected
  19: HairyRoot WT Myc control   20: HairyRoot WT Myc Infected
  21: Hypocotyl A17 10C 100C-day1   22: Hypocotyl A17 10C 100C-day2
  23: Hypocotyl A17 10C 35C-day1   24: Hypocotyl A17 10C 35C-day2
  25: Hypocotyl A17 10C 50C-day1   26: Hypocotyl A17 10C 50C-day2
  27: Hypocotyl A17 20C 100C-day1   28: Hypocotyl A17 20C 100C-day2
  29: Hypocotyl A17 20C 35C-day1   30: Hypocotyl A17 20C 35C-day2
  31: Hypocotyl A17 20C 50C-day1   32: Hypocotyl A17 20C 50C-day2
  33: Hypocotyl F83 10C 100C-day1   34: Hypocotyl F83 10C 100C-day2
  35: Hypocotyl F83 10C 35C-day1   36: Hypocotyl F83 10C 35C-day2
  37: Hypocotyl F83 10C 50C-day1   38: Hypocotyl F83 10C 50C-day2
  39: Hypocotyl F83 20C 100C-day1   40: Hypocotyl F83 20C 100C-day2
  41: Hypocotyl F83 20C 35C-day1   42: Hypocotyl F83 20C 35C-day2
  43: Hypocotyl F83 20C 50C-day1   44: Hypocotyl F83 20C 50C-day2
  45: Leaf GUS-ox   46: Leaf MtLAP1
  47: Leaf   48: Leaf 2HA 1wk
  49: Leaf 2HA 1wk NAA   50: Leaf 2HA 2wk NAA BAP
  51: Leaf CYO716A12   52: Leaf CYO716A12 R108
  53: Leaf IRG1 R108   54: Leaf irg1-1
  55: Leaf irg1-2   56: Leaf irg1-5
  57: Leaf Jemalong 2wk NAA BAP   58: Nod 10dpi
  59: Nod 14dpi   60: Nod 16dpi+NO3
  61: Nod 28dpi   62: Nod 4dpi
  63: Nod Naut1 SalsB   64: Nod Naut1 SalsC
  65: Nod phosphinothricin 0h   66: Nod phosphinothricin 24h
  67: Nod phosphinothricin 4h   68: Nod phosphinothricin 8h
  69: Nod R108   70: Nod Sals4 SalsB
  71: Nod Sals4 SalsC   72: Nod zone2
  73: Nod NOOT NF2717   74: Nod NOOT TNK507
  75: Petiole   76: Pod
  77: Root   78: Root 0dpi
  79: Root 2d Sdl culture 180mM NaCl 0h   80: Root 2d Sdl culture 180mM NaCl 6h
  81: Root 2d Sdl culture 180mM NaCl 24h   82: Root 2d Sdl culture 180mM NaCl 48h
  83: Root 1cm adj tip   84: Root 2wk Sdl Hydroponic 200mM NaCl 0h
  85: Root 2wk Sdl Hydroponic 200mM NaCl 10h   86: Root 2wk Sdl Hydroponic 200mM NaCl 1h
  87: Root 2wk Sdl Hydroponic 200mM NaCl 24h   88: Root 2wk Sdl Hydroponic 200mM NaCl 2h
  89: Root 2wk Sdl Hydroponic 200mM NaCl 5h   90: Root 3mm tip
  91: Root 5wk LimtNH4 NH4C   92: Root 5wk LimtNO3 NO3C
  93: Root 5wk NoNO3 NO3ONE   94: Root 5wk SuffNH4 NH4S
  95: Root 5wk SuffNO3 NO3S   96: Root A17 1dpi (Aphanomyes)
  97: Root A17 buffer 1d   98: Root A17 buffer 7d
  99: Root A17 mock   100: Root A17 NPA 1d
  101: Root A17 NPA 7d   102: Root A17 TIBA 1d
  103: Root A17 TIBA 7d   104: Root Border cell
  105: Root CRR 0hpi   106: Root CRR 72hpi
  107: Root CRR 96hpi   108: Root (denodulated) 28dpi
  109: Root DMI3 MF control 6h   110: Root DMI3 nsMyc-LCOs 6h
  111: Root DMI3 sMyc-LCOs 6h   112: Root DMI3 s-nsMyc-LCOs 6h
  113: Root drought 10d   114: Root drought 14d
  115: Root drought 14d rewatered 1d   116: Root drought 2d
  117: Root drought 3d   118: Root drought 4d
  119: Root drought 7d   120: Root J5 10mM KNO3
  121: Root J5 1mM KNO3   122: Root LCM adjacent
  123: Root LCM arbuscular   124: Root LCM cortical
  125: Root Macrophomina infected 0hpi   126: Root Macrophomina infected 24hpi
  127: Root Macrophomina infected 36hpi   128: Root Macrophomina infected 48hpi
  129: Root Myc control   130: Root Myc infection
  131: Root Myc 3wk infection   132: Root NFP MF control 6h
  133: Root NFP nsMyc-LCOs 6h   134: Root NFP sMyc-LCOs 6h
  135: Root NFP s-nsMyc-LCOs 6h   136: Root nfp-2 1dpi (Aphanomyes)
  137: Root nfp-2 mock   138: Root Nod 5wk LimtN2 N2C
  139: Root Nod 5wk SuffN2 N2S   140: Root R108
  141: Root tip   142: Root Tip A17 0hpi (Ralstonia)
  143: Root Tip A17 12hpi (Ralstonia)   144: Root Tip A17 72hpi (Ralstonia)
  145: Root Tip F83005.5 0hpi (Ralstonia)   146: Root Tip F83005.5 12hpi (Ralstonia)
  147: Root Tip F83005.5 72hpi (Ralstonia)   148: Root Tip sickle 0hpi (Ralstonia)
  149: Root Tip sickle 12hpi (Ralstonia)   150: Root Tip sickle 72hpi (Ralstonia)
  151: Root tr185 10mM KNO3   152: Root tr185 1mM KNO3
  153: Root transgenic GUS (TT2 control)   154: Root transgenic TT2
  155: Root watered 4d   156: Root watered d2
  157: Root Whole   158: Root WT MF control 24h
  159: Root WT MF control 6h   160: Root WT NF control 24h
  161: Root WT NF control 6h   162: Root WT Nod-LCOs 24h
  163: Root WT Nod-LCOs 6h   164: Root WT nsMyc-LCOs 24h
  165: Root WT nsMyc-LCOs 6h   166: Root WT sMyc-LCOs 24h
  167: Root WT sMyc-LCOs 6h   168: Root WT s-nsMyc-LCOs 24h
  169: Root WT s-nsMyc-LCOs 6h   170: Seed 10dap
  171: Seed 12dap   172: Seed 16dap
  173: Seed 20dap   174: Seed 24dap
  175: Seed 36dap   176: Seed Coat
  177: Seeds transgenic R108 (control)   178: Seeds transgenic R108 GuarMannSynt
  179: Shoot 5wk LimtN2 N2PAE   180: Shoot 5wk LimtNH4 NH4PAE
  181: Shoot 5wk LimtNO3 NO3PAE   182: Shoot 5wk SuffN2 N2PAT
  183: Shoot 5wk SuffNH4 NH4PAT   184: Shoot 5wk SuffNO3 NO3PAT
  185: Shoot drought 10d   186: Shoot drought 14d
  187: Shoot drought 14d rewatered 1d   188: Shoot drought 2d
  189: Shoot drought 3d   190: Shoot drought 4d
  191: Shoot drought 7d   192: Shoot R108
  193: Shoot stenofolia   194: Shoot watered 4d
  195: Shoot watered 2d   196: Stem
  197: Stem internode1   198: Stem internode2
  199: Stem internode4   200: Stem internode6
  201: Stem internode8   202: Stem stp
  203: Stem WT-STP R108   204: Stem nStem1-2
  205: Stem nStem1-p   206: Stem R108-NStem1-2
  207: Stem R108-NStem1-P   208: sunn LimN
  209: sunn SuffN   210: Vegetative Buds
  211: Nod 3dpi   212: Nod 6dpi
  213: Nod 10dpi C   214: Nod 14dpi C
  215: Nod 20dpi   216: Root 3dpi (control)
  217: Root 6dpi (control)   218: Root 10dpi (control)
  219: Root 14dpi (control)   220: Root 20dpi (control)
  221: Root meristem   222: Root (28dpi) Myc (G. intraradices) 6wk 20 uM P
  223: Root (28dpi) Myc (G. mosseae) 6wk 20 uM P   224: Root non-Myc (control) 6wk 20 uM P
  225: Root non-Myc 6wk 2 mM P   226: Shoot 10wk (41dpi)
  227: Flower 12wk (56dpi)   228: Pod 12wk (56dpi)
  229: Nodule (20d)   230: Nodule (20d) - 4h PPT
  231: Nodule (20d) - 8h PPT   232: Nodule (20d) - 24h PPT
  233: Root sunn-2 skl 5d seedling - 4h Nod factor   234: Root sunn-2 skl 5d seedling - 24h Nod factor
  235: Root sunn-2 skl 5d seedling - 4h Mock   236: Root sunn-2 skl 5d seedling - 24h Mock
  237: Root A17 5d seedling - 24h Nod factor   238: Root A17 5d seedling - 24h Mock
  239: Root YA1/HAP2 5d seedling - 24h Nod factor   240: Root ya1/hap2 5d seedling - 24h Mock
  241: Root ya1/hap2 5d seedling - (T0) non-inoculated (N-starved)   242: Root efd 5d seedling - N-starved
  243: Root A17 5d seedling - N-starved   244: Nodule A17 (6dpi)
  245: Nodule ya1/hap2 (6dpi)   246: Nodule efd (6dpi)
  247: Root A17 5d seedling - 1dpi Sinorhizobium   248: Root ya1/hap2 5d seedling - 1dpi Sinorhizobium
  249: Root A17 5d seedling - 3dpi Sinorhizobium   250: Root ya1/hap2 5d seedling - 3dpi Sinorhizobium
  251: Root A17 control   252: Root DMI3 control
  253: Root A17 inoculated with Gigaspora (early contact)   254: Root DMI3 inoculated with Gigaspora (early contact)
  255: root hairs 1 dpi Sm1021 nodD1ABC deletion mutant   256: root hairs 3 dpi Sm1021 nodD1ABC deletion mutant
  257: root hairs 5 dpi Sm1021 nodD1ABC deletion mutant   258: root hairs 1 dpi Sm1021
  259: root hairs 3 dpi Sm1021   260: root hairs 5 dpi Sm1021
  261: root hairs 5 dpi Sm1021 nodD1ABC deletion mutant sickle-1   262: root hairs 5 dpi Sm1021 sickle
  263: root hairs 5 dpi Sm1021 ern1   264: root hairs 5 dpi Sm1021 nf-ya1 (hap2.1)
  265: root hairs 5 dpi Sm1021 nin   266: root hairs 24h Nod factor control
  267: root hairs 24h 10 nM Nod factors   268: Epidermal cells from root areas containing mature mycorrhizal structures
  269: Cortical cells from mycorrhizal roots containing fungal hyphae   270: Cortical cells from mycorrhizal roots containing arbuscules
  271: Epidermal and cortical cells from non-colonized areas of mycorrhizal roots   272: Uninfected cells from Medicago truncatula root nodules
  273: Infected cells from Medicago truncatula root nodules   274: Epidermal and adjacent cortical cells from areas with visible appressoria
  275: Proximal infection zone cells from Medicago truncatula root nodules   276: Meristem cells from Medicago truncatula root nodules
  277: Distal infection zone cells from Medicago truncatula root nodules
Search criteria: Fold change(s) A/B , or custom value: ,
in of the target experiments (slides), over the reference experiment (slide).
Limit probesets in:
 




 
         
       
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