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      Medicago truncatula Gene Expression Atlas  
 
     
Batch Download by Experiment

This page lists the expression data by experiment (referred to as "chip", "slide" elsewhere) and allows you to download all expressions for experiments of your selection. Experiments are grouped by their data sources (authors).

NOTE: The download file will be generated from the database on the fly. Please be patient while you are expecting a large data set.

Balzergue et al., unpublished
Hypocotyl A17 10C 35C-day1: Organ: stem. Treatment Type: physical treatments. Treatment: A17 10 P1
Selection: Hyptl_A17_10C_35C_day1_1 Mean (Hyptl_A17_10C_35C_day1)

Hypocotyl A17 10C 35C-day2: Organ: stem. Treatment Type: physical treatments. Treatment: A17 10 P1
Selection: Hyptl_A17_10C_35C_day2_1 Mean (Hyptl_A17_10C_35C_day2)

Hypocotyl F83 10C 35C-day1: Organ: stem. Treatment Type: physical treatments. Treatment: F8310 P1
Selection: Hyptl_F83_10C_35C_day1_1 Mean (Hyptl_F83_10C_35C_day1)

Hypocotyl F83 10C 35C-day2: Organ: stem. Treatment Type: physical treatments. Treatment: F8310 P1
Selection: Hyptl_F83_10C_35C_day2_1 Mean (Hyptl_F83_10C_35C_day2)

Hypocotyl A17 10C 50C-day1: Organ: stem. Treatment Type: physical treatments. Treatment: A17 10 P2
Selection: Hyptl_A17_10C_50C_day1_1 Mean (Hyptl_A17_10C_50C_day1)

Hypocotyl A17 10C 50C-day2: Organ: stem. Treatment Type: physical treatments. Treatment: A17 10 P2
Selection: Hyptl_A17_10C_50C_day2_1 Mean (Hyptl_A17_10C_50C_day2)

Hypocotyl F83 10C 50C-day1: Organ: stem. Treatment Type: physical treatments. Treatment: F8310 P2
Selection: Hyptl_F83_10C_50C_day1_1 Mean (Hyptl_F83_10C_50C_day1)

Hypocotyl F83 10C 50C-day2: Organ: stem. Treatment Type: physical treatments. Treatment: F8310 P2
Selection: Hyptl_F83_10C_50C_day2_1 Mean (Hyptl_F83_10C_50C_day2)

Hypocotyl A17 10C 100C-day1: Organ: stem. Treatment Type: physical treatments. Treatment: A17 10 P3
Selection: Hyptl_A17_10C_100C_day1_1 Mean (Hyptl_A17_10C_100C_day1)

Hypocotyl A17 10C 100C-day2: Organ: stem. Treatment Type: physical treatments. Treatment: A17 10 P3
Selection: Hyptl_A17_10C_100C_day2_1 Mean (Hyptl_A17_10C_100C_day2)

Hypocotyl F83 10C 100C-day1: Organ: stem. Treatment Type: physical treatments. Treatment: F8310 P3
Selection: Hyptl_F83_10C_100C_day1_1 Mean (Hyptl_F83_10C_100C_day1)

Hypocotyl F83 10C 100C-day2: Organ: stem. Treatment Type: physical treatments. Treatment: F8310 P3
Selection: Hyptl_F83_10C_100C_day2_1 Mean (Hyptl_F83_10C_100C_day2)

Hypocotyl A17 20C 35C-day1: Organ: stem. Treatment Type: physical treatments. Treatment: A17 20 P1
Selection: Hyptl_A17_20C_35C_day1_1 Mean (Hyptl_A17_20C_35C_day1)

Hypocotyl A17 20C 35C-day2: Organ: stem. Treatment Type: physical treatments. Treatment: A17 20 P1
Selection: Hyptl_A17_20C_35C_day2_1 Mean (Hyptl_A17_20C_35C_day2)

Hypocotyl F83 20C 35C-day1: Organ: stem. Treatment Type: physical treatments. Treatment: F8320 P1
Selection: Hyptl_F83_20C_35C_day1_1 Mean (Hyptl_F83_20C_35C_day1)

Hypocotyl F83 20C 35C-day2: Organ: stem. Treatment Type: physical treatments. Treatment: F8320 P1
Selection: Hyptl_F83_20C_35C_day2_1 Mean (Hyptl_F83_20C_35C_day2)

Hypocotyl A17 20C 50C-day1: Organ: stem. Treatment Type: physical treatments. Treatment: A17 20 P2
Selection: Hyptl_A17_20C_50C_day1_1 Mean (Hyptl_A17_20C_50C_day1)

Hypocotyl A17 20C 50C-day2: Organ: stem. Treatment Type: physical treatments. Treatment: A17 20 P2
Selection: Hyptl_A17_20C_50C_day2_1 Mean (Hyptl_A17_20C_50C_day2)

Hypocotyl F83 20C 50C-day1: Organ: stem. Treatment Type: physical treatments. Treatment: F8320 P2
Selection: Hyptl_F83_20C_50C_day1_1 Mean (Hyptl_F83_20C_50C_day1)

Hypocotyl F83 20C 50C-day2: Organ: stem. Treatment Type: physical treatments. Treatment: F8320 P2
Selection: Hyptl_F83_20C_50C_day2_1 Mean (Hyptl_F83_20C_50C_day2)

Hypocotyl A17 20C 100C-day1: Organ: stem. Treatment Type: physical treatments. Treatment: A17 20 P3
Selection: Hyptl_A17_20C_100C_day1_1 Mean (Hyptl_A17_20C_100C_day1)

Hypocotyl A17 20C 100C-day2: Organ: stem. Treatment Type: physical treatments. Treatment: A17 20 P3
Selection: Hyptl_A17_20C_100C_day2_1 Mean (Hyptl_A17_20C_100C_day2)

Hypocotyl F83 20C 100C-day1: Organ: stem. Treatment Type: physical treatments. Treatment: F8320 P3
Selection: Hyptl_F83_20C_100C_day1_1 Mean (Hyptl_F83_20C_100C_day1)

Hypocotyl F83 20C 100C-day2: Organ: stem. Treatment Type: physical treatments. Treatment: F8320 P3
Selection: Hyptl_F83_20C_100C_day2_1 Mean (Hyptl_F83_20C_100C_day2)

Root Tip A17 0hpi (Ralstonia): Organ: root. Treatment Type: biological treatment. Treatment: WT - 0h post-infection (Ralstonia)
Selection: RT_Tip_A17_0hpi_1RT_Tip_A17_0hpi_2RT_Tip_A17_0hpi_3 Mean (RT_Tip_A17_0hpi)

Root Tip A17 12hpi (Ralstonia): Organ: root. Treatment Type: biological treatment. Treatment: WT - 12h post-infection (Ralstonia)
Selection: RT_Tip_A17_12hpi_1RT_Tip_A17_12hpi_2RT_Tip_A17_12hpi_3 Mean (RT_Tip_A17_12hpi)

Root Tip A17 72hpi (Ralstonia): Organ: root. Treatment Type: biological treatment. Treatment: WT - 72h post-infection (Ralstonia)
Selection: RT_Tip_A17_72hpi_1RT_Tip_A17_72hpi_2RT_Tip_A17_72hpi_3 Mean (RT_Tip_A17_72hpi)

Root Tip sickle 0hpi (Ralstonia): Organ: root. Treatment Type: biological treatment. Treatment: sickle - 0h post-infection (Ralstonia)
Selection: RT_Tip_sickle_0hpi_1RT_Tip_sickle_0hpi_2RT_Tip_sickle_0hpi_3 Mean (RT_Tip_sickle_0hpi)

Root Tip sickle 12hpi (Ralstonia): Organ: root. Treatment Type: biological treatment. Treatment: sickle - 12h post-infection (Ralstonia)
Selection: RT_Tip_sickle_12hpi_1RT_Tip_sickle_12hpi_2RT_Tip_sickle_12hpi_3 Mean (RT_Tip_sickle_12hpi)

Root Tip sickle 72hpi (Ralstonia): Organ: root. Treatment Type: biological treatment. Treatment: sickle - 72h post-infection (Ralstonia)
Selection: RT_Tip_sickle_72hpi_1RT_Tip_sickle_72hpi_2RT_Tip_sickle_72hpi_3 Mean (RT_Tip_sickle_72hpi)

Root Tip F83005.5 0hpi (Ralstonia): Organ: root. Treatment Type: biological treatment. Treatment: F83005.5 (resistant) - 0h post-infection (Ralstonia)
Selection: RT_Tip_F83005_5_0hpi_1RT_Tip_F83005_5_0hpi_2RT_Tip_F83005_5_0hpi_3 Mean (RT_Tip_F83005_5_0hpi)

Root Tip F83005.5 12hpi (Ralstonia): Organ: root. Treatment Type: biological treatment. Treatment: F83005.5 (resistant) - 12h post-infection (Ralstonia)
Selection: RT_Tip_F83005_5_12hpi_1RT_Tip_F83005_5_12hpi_2RT_Tip_F83005_5_12hpi_3 Mean (RT_Tip_F83005_5_12hpi)

Root Tip F83005.5 72hpi (Ralstonia): Organ: root. Treatment Type: biological treatment. Treatment: F83005.5 (resistant) - 72h post-infection (Ralstonia)
Selection: RT_Tip_F83005_5_72hpi_1RT_Tip_F83005_5_72hpi_2RT_Tip_F83005_5_72hpi_3 Mean (RT_Tip_F83005_5_72hpi)

Root Myc 3wk infection: Organ: root. Treatment Type: biological treatment. Treatment: plant-microorganism interactions, nodulation
Selection: RT_Myc_3wks_infection_1RT_Myc_3wks_infection_2RT_Myc_3wks_infection_3 Mean (RT_Myc_3wks_infection)

Root J5 10mM KNO3: Organ: root. Treatment Type: chemical and biological treatments. Treatment: J5(WT)-10mM KNO3
Selection: RT_J5_10mM_KNO3_1RT_J5_10mM_KNO3_2RT_J5_10mM_KNO3_3 Mean (RT_J5_10mM_KNO3)

Root J5 1mM KNO3: Organ: root. Treatment Type: chemical and biological treatments. Treatment: J5(WT)-1mM KNO3
Selection: RT_J5_1mM_KNO3_1RT_J5_1mM_KNO3_2RT_J5_1mM_KNO3_3 Mean (RT_J5_1mM_KNO3)

Root tr185 10mM KNO3: Organ: root. Treatment Type: chemical and biological treatments. Treatment: tr185-10mM KNO3
Selection: RT_tr185_10mM_KNO3_1RT_tr185_10mM_KNO3_2RT_tr185_10mM_KNO3_3 Mean (RT_tr185_10mM_KNO3)

Root tr185 1mM KNO3: Organ: root. Treatment Type: chemical and biological treatments. Treatment: tr185-1mM KNO3
Selection: RT_tr185_1mM_KNO3_1RT_tr185_1mM_KNO3_2RT_tr185_1mM_KNO3_3 Mean (RT_tr185_1mM_KNO3)

GiantCell: Organ: root. Treatment Type: biological treatment. Treatment: gall development by nematode infection
Selection: GiantCell_1GiantCell_2GiantCell_3 Mean (GiantCell)

GallTissue-surrounding GiantCell (-): Organ: root. Treatment Type: biological treatment. Treatment: gall development by nematode infection
Selection: GallTissue_GiantCell_1GallTissue_GiantCell_2GallTissue_GiantCell_3 Mean (GallTissue_GiantCell)

Nod zone2: Organ: root. Treatment Type: biological treatment. Treatment: plant-microorganism interactions, nodulation
Selection: Nod_zone2_1Nod_zone2_2Nod_zone2_3 Mean (Nod_zone2)

Becker et al. (unpublished)
Shoot 10wk (41dpi): Organ: shoot (whole aerial system). Treatment Type: standard growth conditions. Treatment: 10wk-old (41dpi with S. meliloti) whole shoot with first inflorescences
Selection: Shoot_10wk_41dpi_1Shoot_10wk_41dpi_2Shoot_10wk_41dpi_3 Mean (Shoot_10wk_41dpi)

Flower 12wk (56dpi): Organ: flower. Treatment Type: standard growth conditions. Treatment: 12wk-old (56dpi with S. meliloti) open flowers
Selection: Flower_12wk_56dpi_1Flower_12wk_56dpi_2Flower_12wk_56dpi_3 Mean (Flower_12wk_56dpi)

Pod 12wk (56dpi): Organ: pod. Treatment Type: standard growth conditions. Treatment: 12wk-old (56dpi with S. meliloti) green pods with seeds
Selection: Pod_12wk_56dpi_1Pod_12wk_56dpi_2Pod_12wk_56dpi_3 Mean (Pod_12wk_56dpi)

Benedito et al., 2008 (http://www.ncbi.nlm.nih.gov/pubmed/18410479)
Leaf: Organ: leaf. Treatment Type: standard growth conditions. Treatment: reference (28d-old organ)
Selection: Leaf_1Leaf_2Leaf_3 Mean (Leaf)

Petiole: Organ: leaf. Treatment Type: standard growth conditions. Treatment: reference (28d-old organ)
Selection: Petiole_1Petiole_2Petiole_3 Mean (Petiole)

Vegetative Buds: Organ: vegetative bud. Treatment Type: standard growth conditions. Treatment: reference (28d-old organ)
Selection: VegBud_1VegBud_2VegBud_3 Mean (VegBud)

Stem: Organ: stem. Treatment Type: standard growth conditions. Treatment: reference (28d-old organ)
Selection: Stem_1Stem_2Stem_3 Mean (Stem)

Flower: Organ: flower. Treatment Type: standard growth conditions. Treatment: reference (28d-old organ)
Selection: Flower_1Flower_2Flower_3 Mean (Flower)

Pod: Organ: pod. Treatment Type: standard growth conditions. Treatment: reference (28d-old organ)
Selection: Pod_1Pod_2Pod_3 Mean (Pod)

Seed 10dap: Organ: seed. Treatment Type: standard growth conditions. Treatment: 10dap developing seeds: late embryogenesis (heart stage) (time course)
Selection: Seed_10dap_1Seed_10dap_2Seed_10dap_3 Mean (Seed_10dap)

Seed 12dap: Organ: seed. Treatment Type: standard growth conditions. Treatment: 12dap developing seeds: transition phase (time course)
Selection: Seed_12dap_1Seed_12dap_2Seed_12dap_3 Mean (Seed_12dap)

Seed 16dap: Organ: seed. Treatment Type: standard growth conditions. Treatment: 16dap developing seeds: seed filling (time course)
Selection: Seed_16dap_1Seed_16dap_2Seed_16dap_3 Mean (Seed_16dap)

Seed 20dap: Organ: seed. Treatment Type: standard growth conditions. Treatment: 20dap developing seeds: seed filling (time course)
Selection: Seed_20dap_1Seed_20dap_2Seed_20dap_3 Mean (Seed_20dap)

Seed 24dap: Organ: seed. Treatment Type: standard growth conditions. Treatment: 24dap developing seeds: seed filling (time course)
Selection: Seed_24dap_1Seed_24dap_2Seed_24dap_3 Mean (Seed_24dap)

Seed 36dap: Organ: seed. Treatment Type: standard growth conditions. Treatment: 36dap developing seeds: physiological maturity (time course)
Selection: Seed_36dap_1Seed_36dap_2Seed_36dap_3 Mean (Seed_36dap)

Root: Organ: root. Treatment Type: standard growth conditions. Treatment: reference (28d-old organ)
Selection: Root_1Root_2Root_3 Mean (Root)

Root (denodulated) 28dpi: Organ: root. Treatment Type: biological treatment. Treatment: 28d-old denodulated root
Selection: RT_DeNod_28dpi_1RT_DeNod_28dpi_2RT_DeNod_28dpi_3 Mean (RT_DeNod_28dpi)

Root 0dpi: Organ: root. Treatment Type: biological treatment. Treatment: root at inoculation inoculation (control)
Selection: RT_0dpi_1RT_0dpi_2RT_0dpi_3 Mean (RT_0dpi)

Nod 4dpi: Organ: nodule. Treatment Type: biological treatment. Treatment: 4d after rhizobial inoculation (lumps)
Selection: Nod_4dpi_1Nod_4dpi_2Nod_4dpi_3 Mean (Nod_4dpi)

Nod 10dpi: Organ: nodule. Treatment Type: biological treatment. Treatment: 10d after rhizobial inoculation (imature nodules)
Selection: Nod_10dpi_1Nod_10dpi_1Nod_10dpi_2Nod_10dpi_2Nod_10dpi_3Nod_10dpi_3 Mean (Nod_10dpi)

Nod 14dpi: Organ: nodule. Treatment Type: biological treatment. Treatment: 14d after rhizobial iocoulation (fixing N2)
Selection: Nod_14dpi_1Nod_14dpi_1Nod_14dpi_2Nod_14dpi_2Nod_14dpi_3Nod_14dpi_3 Mean (Nod_14dpi)

Nod 28dpi: Organ: nodule. Treatment Type: biological treatment. Treatment: 28d after rhizobial inoculation (reference organ)
Selection: Nod_28dpi_1Nod_28dpi_2Nod_28dpi_3 Mean (Nod_28dpi)

Nod 16dpi+NO3: Organ: nodule. Treatment Type: biological treatment. Treatment: 16d after rhizobial inoculation (2d after NO3 treatment)
Selection: Nod_16dpi_NO3_1Nod_16dpi_NO3_2Nod_16dpi_NO3_3 Mean (Nod_16dpi_NO3)

Breakspear et al., (unpublished)
root hairs 1 dpi Sm1021 nodD1ABC deletion mutant: Organ: Root hair. Treatment Type: Biological. Treatment: 1 day post inoculation with S. meliloti 1021 nodD1ABC deletion mutant (control)
Selection: 1_dpi_nodD_rep11_dpi_nodD_rep21_dpi_nodD_rep3 Mean (1_dpi_nodD)

root hairs 3 dpi Sm1021 nodD1ABC deletion mutant: Organ: Root hair. Treatment Type: Biological. Treatment: 3 days post inoculation with S. meliloti 1021 nodD1ABC deletion mutant (control)
Selection: 3_dpi_nodD_rep13_dpi_nodD_rep23_dpi_nodD_rep3 Mean (3_dpi_nodD)

root hairs 5 dpi Sm1021 nodD1ABC deletion mutant: Organ: Root hair. Treatment Type: Biological. Treatment: 5 days post inoculation with S. meliloti 1021 nodD1ABC deletion mutant (control)
Selection: 5_dpi_nodD_rep15_dpi_nodD_rep25_dpi_nodD_rep3 Mean (5_dpi_nodD)

root hairs 1 dpi Sm1021: Organ: Root hair. Treatment Type: Biological. Treatment: 1 day post inoculation with S. meliloti 1021
Selection: 1_dpi_rep11_dpi_rep21_dpi_rep3 Mean (1_dpi)

root hairs 3 dpi Sm1021: Organ: Root hair. Treatment Type: Biological. Treatment: 3 days post inoculation with S. meliloti 1021
Selection: 3_dpi_rep13_dpi_rep23_dpi_rep3 Mean (3_dpi)

root hairs 5 dpi Sm1021: Organ: Root hair. Treatment Type: Biological. Treatment: 5 days post inoculation with S. meliloti 1021
Selection: 5_dpi_rep15_dpi_rep25_dpi_rep3 Mean (5_dpi)

root hairs 5 dpi Sm1021 nodD1ABC deletion mutant sickle-1: Organ: Root hair. Treatment Type: Biological. Treatment: 5 days post inoculation with S. meliloti 1021 nodD1ABC deletion mutant (control)
Selection: 5_dpi_nodD_skl_rep15_dpi_nodD_skl_rep25_dpi_nodD_skl_rep3 Mean (5_dpi_nodD_skl)

root hairs 5 dpi Sm1021 sickle: Organ: Root hair. Treatment Type: Biological. Treatment: 5 days post inoculation with S. meliloti 1021
Selection: 5_dpi_skl_rep15_dpi_skl_rep25_dpi_skl_rep3 Mean (5_dpi_skl)

root hairs 24h Nod factor control: Organ: Root hair. Treatment Type: Chemical. Treatment: 1 day post treatment with a control Nod factor preparation from S. meliloti 1021 nodD1ABC deletion mutant (control)
Selection: 24h_Nod_rep124h_Nod_rep224h_Nod_rep3 Mean (24h_Nod)

root hairs 24h 10 nM Nod factors: Organ: Root hair. Treatment Type: Chemical. Treatment: 1 day post treatment with 10 nM nod factors purified from S. meliloti 1021
Selection: 24h_10nM_rep124h_10nM_rep224h_10nM_rep3 Mean (24h_10nM)

Carelli et al., 2011 (http://www.ncbi.nlm.nih.gov/pubmed/21821776)
Leaf CYO716A12: Organ: leaf. Treatment Type: biological treatment. Treatment: CYP716A12 mutant
Selection: LF_CYO716A12_1LF_CYO716A12_2LF_CYO716A12_3 Mean (LF_CYO716A12)

Leaf CYO716A12 R108: Organ: leaf. Treatment Type: biological treatment. Treatment: control
Selection: LF_CYO716A12_R108_1LF_CYO716A12_R108_2LF_CYO716A12_R108_3 Mean (LF_CYO716A12_R108)

Carvalho et al. (unpublished)
Root meristem: Organ: root. Treatment Type: standard growth conditions. Treatment: root meristem
Selection: Root_meristem_1Root_meristem_2Root_meristem_3 Mean (Root_meristem)

Root 3dpi (control): Organ: root. Treatment Type: standard growth conditions. Treatment: 3d root (control for nodulation time-course)
Selection: Root_3dpi_control_1Root_3dpi_control_2Root_3dpi_control_3 Mean (Root_3dpi_control)

Root 6dpi (control): Organ: root. Treatment Type: standard growth conditions. Treatment: 6d root (control for nodulation time-course)
Selection: Root_6dpi_control_1Root_6dpi_control_2Root_6dpi_control_3 Mean (Root_6dpi_control)

Root 10dpi (control): Organ: root. Treatment Type: standard growth conditions. Treatment: 10d root (control for nodulation time-course)
Selection: Root_10dpi_control_1Root_10dpi_control_2Root_10dpi_control_3 Mean (Root_10dpi_control)

Root 14dpi (control): Organ: root. Treatment Type: standard growth conditions. Treatment: 14d root (control for nodulation time-course)
Selection: Root_14dpi_control_1Root_14dpi_control_2Root_14dpi_control_3 Mean (Root_14dpi_control)

Root 20dpi (control): Organ: root. Treatment Type: standard growth conditions. Treatment: 20d root (control for nodulation time-course)
Selection: Root_20dpi_control_1Root_20dpi_control_2Root_20dpi_control_3 Mean (Root_20dpi_control)

Nod 3dpi: Organ: nodule. Treatment Type: biological treatment. Treatment: 3d after rhizobial inoculation (nodulation time-course)
Selection: Nod_3dpi_1Nod_3dpi_2Nod_3dpi_3 Mean (Nod_3dpi)

Nod 6dpi: Organ: nodule. Treatment Type: biological treatment. Treatment: 6d after rhizobial inoculation (nodulation time-course)
Selection: Nod_6dpi_1Nod_6dpi_2Nod_6dpi_3 Mean (Nod_6dpi)

Nod 14dpi C: Organ: nodule. Treatment Type: biological treatment. Treatment: 14d after rhizobial inoculation (nodulation time-course)
Selection: Mean (Nod_14dpi_C)

Nod 10dpi C: Organ: nodule. Treatment Type: biological treatment. Treatment: 10d after rhizobial inoculation (nodulation time-course)
Selection: Mean (Nod_10dpi_C)

Nod 20dpi: Organ: nodule. Treatment Type: biological treatment. Treatment: 20d after rhizobial inoculation (nodulation time-course)
Selection: Nod_20dpi_1Nod_20dpi_2Nod_20dpi_3 Mean (Nod_20dpi)

Czaja et al., 2012 (http://www.ncbi.nlm.nih.gov/pubmed/22652128)
Root WT NF control 6h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: Wild-type, plantlet roots treated with Nod-LCO control solution 6h
Selection: RT_WT_NF_control_6h_1RT_WT_NF_control_6h_2RT_WT_NF_control_6h_3 Mean (RT_WT_NF_control_6h)

Root WT NF control 24h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: Wild-type, plantlet roots treated with Nod-LCO control solution 24h
Selection: RT_WT_NF_control_24h_1RT_WT_NF_control_24h_2RT_WT_NF_control_24h_3 Mean (RT_WT_NF_control_24h)

Root WT MF control 6h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: Wild-type, plantlet roots treated with Myc-LCOs control solution 6h
Selection: RT_WT_MF_control_6h_1RT_WT_MF_control_6h_2RT_WT_MF_control_6h_3 Mean (RT_WT_MF_control_6h)

Root WT MF control 24h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: Wild-type, plantlet roots treated with Myc-LCOs control solution 24h
Selection: RT_WT_MF_control_24h_1RT_WT_MF_control_24h_2RT_WT_MF_control_24h_3 Mean (RT_WT_MF_control_24h)

Root WT Nod-LCOs 6h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: Wild-type, plantlet roots treated with symbioticNod-LCOs 6h
Selection: RT_WT_Nod_LCOs_6h_1RT_WT_Nod_LCOs_6h_2RT_WT_Nod_LCOs_6h_3 Mean (RT_WT_Nod_LCOs_6h)

Root WT Nod-LCOs 24h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: Wild-type, plantlet roots treated with symbioticNod-LCOs 24h
Selection: RT_WT_Nod_LCOs_24h_1RT_WT_Nod_LCOs_24h_2RT_WT_Nod_LCOs_24h_3 Mean (RT_WT_Nod_LCOs_24h)

Root WT nsMyc-LCOs 6h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: Wild-type, plantlet roots treated with symbiotic nsMyc-LCOs 6h
Selection: RT_WT_nsMyc_LCOs_6h_1RT_WT_nsMyc_LCOs_6h_2RT_WT_nsMyc_LCOs_6h_3 Mean (RT_WT_nsMyc_LCOs_6h)

Root WT nsMyc-LCOs 24h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: Wild-type, plantlet roots treated with symbiotic nsMyc-LCOs 24h
Selection: RT_WT_nsMyc_LCOs_24h_1RT_WT_nsMyc_LCOs_24h_2RT_WT_nsMyc_LCOs_24h_3 Mean (RT_WT_nsMyc_LCOs_24h)

Root WT sMyc-LCOs 6h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: Wild-type, plantlet roots treated with symbiotic sMyc-LCOs 6h
Selection: RT_WT_sMyc_LCOs_6h_1RT_WT_sMyc_LCOs_6h_2RT_WT_sMyc_LCOs_6h_3 Mean (RT_WT_sMyc_LCOs_6h)

Root WT sMyc-LCOs 24h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: Wild-type, plantlet roots treated with symbiotic sMyc-LCOs 24h
Selection: RT_WT_sMyc_LCOs_24h_1RT_WT_sMyc_LCOs_24h_2RT_WT_sMyc_LCOs_24h_3 Mean (RT_WT_sMyc_LCOs_24h)

Root WT s-nsMyc-LCOs 6h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: Wild-type, plantlet roots treated with symbiotic s/nsMyc-LCOs 6h
Selection: RT_WT_s_nsMyc_LCOs_6h_1RT_WT_s_nsMyc_LCOs_6h_2RT_WT_s_nsMyc_LCOs_6h_3 Mean (RT_WT_s_nsMyc_LCOs_6h)

Root WT s-nsMyc-LCOs 24h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: Wild-type, plantlet roots treated with symbiotic s/nsMyc-LCOs 24h
Selection: RT_WT_s_nsMyc_LCOs_24h_1RT_WT_s_nsMyc_LCOs_24h_2RT_WT_s_nsMyc_LCOs_24h_3 Mean (RT_WT_s_nsMyc_LCOs_24h)

Root DMI3 MF control 6h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: MDI3, plantlet roots treated with Myc-LCOs control solution 6h
Selection: RT_DMI3_MF_Control_6h_1RT_DMI3_MF_Control_6h_2RT_DMI3_MF_Control_6h_3 Mean (RT_DMI3_MF_Control_6h)

Root DMI3 nsMyc-LCOs 6h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: DMI3, plantlet roots treated with symbiotic nsMyc-LCOs 6h
Selection: RT_DMI3_nsMyc_LCOs_6h_1RT_DMI3_nsMyc_LCOs_6h_2RT_DMI3_nsMyc_LCOs_6h_3 Mean (RT_DMI3_nsMyc_LCOs_6h)

Root DMI3 sMyc-LCOs 6h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: DMI3, plantlet roots treated with symbiotic sMyc-LCOs 6h
Selection: RT_DMI3_sMyc_LCOs_6h_1RT_DMI3_sMyc_LCOs_6h_2RT_DMI3_sMyc_LCOs_6h_3 Mean (RT_DMI3_sMyc_LCOs_6h)

Root DMI3 s-nsMyc-LCOs 6h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: DMI3, plantlet roots treated with symbiotic s/nsMyc-LCOs 6h
Selection: RT_DMI3_s_nsMyc_LCOs_6h_1RT_DMI3_s_nsMyc_LCOs_6h_2RT_DMI3_s_nsMyc_LCOs_6h_3 Mean (RT_DMI3_s_nsMyc_LCOs_6h)

Root NFP MF control 6h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: NFP, plantlet roots treated with Myc-LCOs control solution 6h
Selection: RT_NFP_MF_Control_6h_1RT_NFP_MF_Control_6h_2RT_NFP_MF_Control_6h_3 Mean (RT_NFP_MF_Control_6h)

Root NFP nsMyc-LCOs 6h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: NFP, plantlet roots treated with symbiotic nsMyc-LCOs 6h
Selection: RT_NFP_nsMyc_LCOs_6h_1RT_NFP_nsMyc_LCOs_6h_2RT_NFP_nsMyc_LCOs_6h_3 Mean (RT_NFP_nsMyc_LCOs_6h)

Root NFP sMyc-LCOs 6h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: NFP, plantlet roots treated with symbiotic sMyc-LCOs 6h
Selection: RT_NFP_sMyc_LCOs_6h_1RT_NFP_sMyc_LCOs_6h_2RT_NFP_sMyc_LCOs_6h_3 Mean (RT_NFP_sMyc_LCOs_6h)

Root NFP s-nsMyc-LCOs 6h: Organ: root. Treatment Type: chemical and biological treatments. Treatment: NFP, plantlet roots treated with symbiotic s/nsMyc-LCOs 6h
Selection: RT_NFP_s_nsMyc_LCOs_6h_1RT_NFP_s_nsMyc_LCOs_6h_2RT_NFP_s_nsMyc_LCOs_6h_3 Mean (RT_NFP_s_nsMyc_LCOs_6h)

Gaude et al., 2011 (http://www.ncbi.nlm.nih.gov/pubmed/21978245)
Root LCM arbuscular: Organ: arbuscular mycorrhiza LMD. Treatment Type: biological treatment / anatomy. Treatment: arbuscule-containing mycorrhizal root cortical cells
Selection: RT_LCM_arbuscular_1RT_LCM_arbuscular_2 Mean (RT_LCM_arbuscular)

Root LCM cortical: Organ: arbuscular mycorrhiza LMD. Treatment Type: biological treatment / anatomy. Treatment: non-mycorrhizal root cortical cells
Selection: RT_LCM_cortical_1RT_LCM_cortical_2 Mean (RT_LCM_cortical)

Root LCM adjacent: Organ: arbuscular mycorrhiza LMD. Treatment Type: biological treatment / anatomy. Treatment: non-colonized mycorrhizal root cortical cells
Selection: RT_LCM_adjacent_1RT_LCM_adjacent_2 Mean (RT_LCM_adjacent)

Gomez et al., 2009 (http://www.ncbi.nlm.nih.gov/pubmed/19161626)
Root Myc control: Organ: root. Treatment Type: biological treatment. Treatment: 6wk-old uninoculated roots (control for mycorhization)
Selection: RT_AM_CK_1RT_AM_CK_2RT_AM_CK_3 Mean (RT_AM_CK)

Root Myc infection: Organ: root. Treatment Type: biological treatment. Treatment: 6wk-old (30dpi) mycorrhizal roots
Selection: RT_AM_Inf_1RT_AM_Inf_2RT_AM_Inf_3 Mean (RT_AM_Inf)

Heath et al., 2012 (http://www.ncbi.nlm.nih.gov/pubmed/22672103)
Nod Naut1 SalsC: Organ: nodule. Treatment Type: biological treatment. Treatment: Naut1 plants were inoculated with SalsC Sinorhizobium meliloti
Selection: Nod_Naut1_SalsC_1Nod_Naut1_SalsC_2Nod_Naut1_SalsC_3 Mean (Nod_Naut1_SalsC)

Nod Naut1 SalsB: Organ: nodule. Treatment Type: biological treatment. Treatment: Naut1 plants were inoculated with SalsB Sinorhizobium meliloti
Selection: Nod_Naut1_SalsB_1Nod_Naut1_SalsB_2Nod_Naut1_SalsB_3 Mean (Nod_Naut1_SalsB)

Nod Sals4 SalsB: Organ: nodule. Treatment Type: biological treatment. Treatment: Sals4 plants were inoculated with SalsB Sinorhizobium meliloti
Selection: Nod_Sals4_SalsB_1Nod_Sals4_SalsB_2Nod_Sals4_SalsB_3 Mean (Nod_Sals4_SalsB)

Nod Sals4 SalsC: Organ: nodule. Treatment Type: biological treatment. Treatment: Sals4 plants were inoculated with SalsC Sinorhizobium meliloti
Selection: Nod_Sals4_SalsC_1Nod_Sals4_SalsC_2Nod_Sals4_SalsC_3 Mean (Nod_Sals4_SalsC)

Hogekamp et al., 2011 (http://www.ncbi.nlm.nih.gov/pubmed/22034628)
Root non-Myc (control) 6wk 20 uM P: Organ: root. Treatment Type: chemical treatment. Treatment: 6wk-old uninoculated roots (control for mycorrhization) grown at 20 microM phosphate
Selection: Root_non_Myc_control_6wk_20_uM_P_1Root_non_Myc_control_6wk_20_uM_P_2Root_non_Myc_control_6wk_20_uM_P_3 Mean (Root_non_Myc_control_6wk_20_uM_P)

Root non-Myc 6wk 2 mM P: Organ: root. Treatment Type: chemical treatment. Treatment: 6wk-old uninoculated roots grown at 2 mM phosphate
Selection: Root_non_Myc_6wk_2_mM_P_1Root_non_Myc_6wk_2_mM_P_2Root_non_Myc_6wk_2_mM_P_3 Mean (Root_non_Myc_6wk_2_mM_P)

Root (28dpi) Myc (G. intraradices) 6wk 20 uM P: Organ: root. Treatment Type: biological treatment. Treatment: 6wk-old (28dpi) mycorrhizal roots (Glomus intraradices) at 20 microM phosphate
Selection: Mean (Root_28dpi_Myc_G_intraradices_6wk_20_uM_P)

Root (28dpi) Myc (G. mosseae) 6wk 20 uM P: Organ: root. Treatment Type: biological treatment. Treatment: 6wk-old (28dpi) mycorrhizal roots (Glomus mosseae) at 20 microM phosphate
Selection: Mean (Root_28dpi_Myc_G_mosseae_6wk_20_uM_P)

Hogekamp et al., 2013 (http://www.ncbi.nlm.nih.gov/pubmed/23647797)
Epidermal and adjacent cortical cells from areas with visible appressoria: Organ: arbuscular mycorrhiza LMD. Treatment Type: biological treatment / anatomy. Treatment: 5-6 days post inoculation with Glomus intraradices
Selection: APP_P1APP_P2APP_P3 Mean (APP)

Epidermal and cortical cells from non-colonized areas of mycorrhizal roots: Organ: arbuscular mycorrhiza LMD. Treatment Type: biological treatment / anatomy. Treatment: 5-6 days post inoculation with Glomus intraradices
Selection: NAP_C1NAP_C2NAP_C3 Mean (NAP)

Cortical cells from mycorrhizal roots containing arbuscules: Organ: arbuscular mycorrhiza LMD. Treatment Type: biological treatment / anatomy. Treatment: 21 days post inoculation with Glomus intraradices
Selection: ARB_A1ARB_A3ARB_A5 Mean (ARB)

Cortical cells from mycorrhizal roots containing fungal hyphae: Organ: arbuscular mycorrhiza LMD. Treatment Type: biological treatment / anatomy. Treatment: 21 days post inoculation with Glomus intraradices
Selection: CMR_K1CMR_K4CMR_K5 Mean (CMR)

Epidermal cells from root areas containing mature mycorrhizal structures: Organ: arbuscular mycorrhiza LMD. Treatment Type: biological treatment / anatomy. Treatment: 21 days post inoculation with Glomus intraradices
Selection: EPI_E1EPI_E2EPI_E3 Mean (EPI)

Holmes et al., 2008 (http://www.ncbi.nlm.nih.gov/pubmed/18302802)
Root 3mm tip: Organ: root. Treatment Type: anatomy. Treatment: 3d-old root tip (3 mm meristem)
Selection: RT_3mm_tip_1RT_3mm_tip_2RT_3mm_tip_3 Mean (RT_3mm_tip)

Root 1cm adj tip: Organ: root. Treatment Type: anatomy. Treatment: 3d-old root (1 cm adjacent from root tip)
Selection: RT_1cm_adj_tip_1RT_1cm_adj_tip_2RT_1cm_adj_tip_3 Mean (RT_1cm_adj_tip)

Imin et al., 2008 (http://www.ncbi.nlm.nih.gov/pubmed/18950541)
Leaf 2HA 1wk: Organ: leaf. Treatment Type: chemical treatment. Treatment: 1wk onto B5 medium
Selection: LF_2HA_1wk_1LF_2HA_1wk_2LF_2HA_1wk_3 Mean (LF_2HA_1wk)

Leaf 2HA 1wk NAA: Organ: leaf. Treatment Type: chemical treatment. Treatment: 1wk onto B5 medium plus 10uM NAA
Selection: LF_2HA_1wk_NAA_1LF_2HA_1wk_NAA_2LF_2HA_1wk_NAA_3 Mean (LF_2HA_1wk_NAA)

Leaf 2HA 2wk NAA BAP: Organ: leaf. Treatment Type: chemical treatment. Treatment: 2wk onto B5 medium plus 10uM NAA + 4uM BAP
Selection: LF_2HA_2wks_NAA_BAP_1LF_2HA_2wks_NAA_BAP_2LF_2HA_2wks_NAA_BAP_3 Mean (LF_2HA_2wks_NAA_BAP)

Leaf Jemalong 2wk NAA BAP: Organ: leaf. Treatment Type: chemical treatment. Treatment: 2wk onto B5 medium plus 10uM NAA + 4uM BAP
Selection: LF_Jemalong_2wks_NAA_BAP_1LF_Jemalong_2wks_NAA_BAP_2LF_Jemalong_2wks_NAA_BAP_3 Mean (LF_Jemalong_2wks_NAA_BAP)

Li et al., 2009 (http://www.ncbi.nlm.nih.gov/pubmed/19906315)
Root 2d Sdl culture 180mM NaCl 0h: Organ: root. Treatment Type: chemical and physical treatments. Treatment: 0h 180 mM NaCl
Selection: RT_2ds_Sdl_culture_180mM_NaCl_0h_1RT_2ds_Sdl_culture_180mM_NaCl_0h_2RT_2ds_Sdl_culture_180mM_NaCl_0h_3 Mean (RT_2ds_Sdl_culture_180mM_NaCl_0h)

Root 2d Sdl culture 180mM NaCl 6h: Organ: root. Treatment Type: chemical and physical treatments. Treatment: 6h 180 mM NaCl
Selection: RT_2ds_Sdl_culture_180mM_NaCl_6h_1RT_2ds_Sdl_culture_180mM_NaCl_6h_2RT_2ds_Sdl_culture_180mM_NaCl_6h_3 Mean (RT_2ds_Sdl_culture_180mM_NaCl_6h)

Root 2d Sdl culture 180mM NaCl 24h: Organ: root. Treatment Type: chemical and physical treatments. Treatment: 24h 180 mM NaCl
Selection: RT_2ds_Sdl_culture_180mM_NaCl_24h_1RT_2ds_Sdl_culture_180mM_NaCl_24h_2RT_2ds_Sdl_culture_180mM_NaCl_24h_3 Mean (RT_2ds_Sdl_culture_180mM_NaCl_24h)

Root 2d Sdl culture 180mM NaCl 48h: Organ: root. Treatment Type: chemical and physical treatments. Treatment: 48h 180 mM NaCl
Selection: RT_2ds_Sdl_culture_180mM_NaCl_48h_1RT_2ds_Sdl_culture_180mM_NaCl_48h_2RT_2ds_Sdl_culture_180mM_NaCl_48h_3 Mean (RT_2ds_Sdl_culture_180mM_NaCl_48h)

Root 2wk Sdl Hydroponic 200mM NaCl 0h: Organ: root. Treatment Type: chemical and physical treatments. Treatment: 2wk-old plants (hydroponics) - 0h under salt stress (200mM NaCl) - control
Selection: RT_2wks_Sdl_Hydroponic_200mM_NaCl_0h_1 Mean (RT_2wks_Sdl_Hydroponic_200mM_NaCl_0h)

Root 2wk Sdl Hydroponic 200mM NaCl 1h: Organ: root. Treatment Type: chemical and physical treatments. Treatment: 2wk-old plants (hydroponics) -1h under salt stress (200mM NaCl)
Selection: RT_2wks_Sdl_Hydroponic_200mM_NaCl_1h_1 Mean (RT_2wks_Sdl_Hydroponic_200mM_NaCl_1h)

Root 2wk Sdl Hydroponic 200mM NaCl 2h: Organ: root. Treatment Type: chemical and physical treatments. Treatment: 2wk-old plants (hydroponics) -2h under salt stress (200mM NaCl)
Selection: RT_2wks_Sdl_Hydroponic_200mM_NaCl_2h_1 Mean (RT_2wks_Sdl_Hydroponic_200mM_NaCl_2h)

Root 2wk Sdl Hydroponic 200mM NaCl 5h: Organ: root. Treatment Type: chemical and physical treatments. Treatment: 2wk-old plants (hydroponics) -5h under salt stress (200mM NaCl)
Selection: RT_2wks_Sdl_Hydroponic_200mM_NaCl_5h_1 Mean (RT_2wks_Sdl_Hydroponic_200mM_NaCl_5h)

Root 2wk Sdl Hydroponic 200mM NaCl 10h: Organ: root. Treatment Type: chemical and physical treatments. Treatment: 2wk-old plants (hydroponics) -10h under salt stress (200mM NaCl)
Selection: RT_2wks_Sdl_Hydroponic_200mM_NaCl_10h_1 Mean (RT_2wks_Sdl_Hydroponic_200mM_NaCl_10h)

Root 2wk Sdl Hydroponic 200mM NaCl 24h: Organ: root. Treatment Type: chemical and physical treatments. Treatment: 2wk-old plants (hydroponics) -24h under salt stress (200mM NaCl)
Selection: RT_2wks_Sdl_Hydroponic_200mM_NaCl_24h_1 Mean (RT_2wks_Sdl_Hydroponic_200mM_NaCl_24h)

Limpens et al., 2013 (http://www.ncbi.nlm.nih.gov/pubmed/23734198)
Meristem cells from Medicago truncatula root nodules: Organ: Nodules LCM. Treatment Type: Biological. Treatment: 21 days post inoculation with S. meliloti 2011
Selection: Meristem_root_nodD_rep1Meristem_root_nodD_rep3Meristem_root_nodD_rep4 Mean (Meristem_root_nodD)

Distal infection zone cells from Medicago truncatula root nodules: Organ: Nodules LCM. Treatment Type: Biological. Treatment: 21 days post inoculation with S. meliloti 2011
Selection: Distal_infection_zone_root_nodD_rep1Distal_infection_zone_root_nodD_rep2Distal_infection_zone_root_nodD_rep3 Mean (Distal_infection_zone_root_nodD)

Proximal infection zone cells from Medicago truncatula root nodules: Organ: Nodules LCM. Treatment Type: Biological. Treatment: 21 days post inoculation with S. meliloti 2011
Selection: Proximal_infection_zone_root_nodD_rep1Proximal_infection_zone_root_nodD_rep2Proximal_infection_zone_root_nodD_rep3 Mean (Proximal_infection_zone_root_nodD)

Infected cells from Medicago truncatula root nodules: Organ: Nodules LCM. Treatment Type: Biological. Treatment: 21 days post inoculation with S. meliloti 2011
Selection: Infected_root_nodD_rep1Infected_root_nodD_rep2Infected_root_nodD_rep3 Mean (Infected_root_nodD)

Uninfected cells from Medicago truncatula root nodules: Organ: Nodules LCM. Treatment Type: Biological. Treatment: 21 days post inoculation with S. meliloti 2011
Selection: Uninfected_root_nodD_rep1Uninfected_root_nodD_rep2Uninfected_root_nodD_rep3 Mean (Uninfected_root_nodD)

Mah et al., 2012 (http://www.sciencedirect.com/science/article/pii/S0885576512000215)
Root Macrophomina infected 0hpi: Organ: root. Treatment Type: biological treatment. Treatment: Macrophomina phaseolina infection of 2 weeks old seedlings, 0 h
Selection: RT_MPH_0hpi_1RT_MPH_0hpi_2RT_MPH_0hpi_3 Mean (RT_MPH_0hpi)

Root Macrophomina infected 24hpi: Organ: root. Treatment Type: biological treatment. Treatment: Macrophomina phaseolina infection of 2 weeks old seedlings, 24 h
Selection: RT_MPH_24hpi_1RT_MPH_24hpi_2RT_MPH_24hpi_3 Mean (RT_MPH_24hpi)

Root Macrophomina infected 36hpi: Organ: root. Treatment Type: biological treatment. Treatment: Macrophomina phaseolina infection of 2 weeks old seedlings, 36 h
Selection: RT_MPH_36hpi_1RT_MPH_36hpi_2RT_MPH_36hpi_3 Mean (RT_MPH_36hpi)

Root Macrophomina infected 48hpi: Organ: root. Treatment Type: biological treatment. Treatment: Macrophomina phaseolina infection of 2 weeks old seedlings, 48 h
Selection: RT_MPH_48hpi_1RT_MPH_48hpi_2RT_MPH_48hpi_3 Mean (RT_MPH_48hpi)

Moreau et al., unpublished
A17 SuffN: Organ: root. Treatment Type: chemical and biological treatments. Treatment: split root - sufficient N
Selection: A17_SuffN_1A17_SuffN_2A17_SuffN_3 Mean (A17_SuffN)

A17 LimN: Organ: root. Treatment Type: chemical and biological treatments. Treatment: split root - limited N
Selection: A17_LimN_1A17_LimN_2A17_LimN_3 Mean (A17_LimN)

A17 rhizobia SuffN: Organ: root. Treatment Type: chemical and biological treatments. Treatment: split root - nodulation - sufficient N2
Selection: A17_rhizobia_SuffN_1A17_rhizobia_SuffN_2A17_rhizobia_SuffN_3 Mean (A17_rhizobia_SuffN)

A17 rhizobia LimN LimN2: Organ: root. Treatment Type: chemical and biological treatments. Treatment: split root - nodulation - limited N2
Selection: A17_rhizobia_LimN_LimN2_1A17_rhizobia_LimN_LimN2_2A17_rhizobia_LimN_LimN2_3 Mean (A17_rhizobia_LimN_LimN2)

sunn SuffN: Organ: root. Treatment Type: chemical and biological treatments. Treatment: sunn mutant treated with sufficient N
Selection: sunn_SuffN_1sunn_SuffN_2sunn_SuffN_3 Mean (sunn_SuffN)

sunn LimN: Organ: root. Treatment Type: chemical and biological treatments. Treatment: sunn mutant treated with limited N
Selection: sunn_LimN_1sunn_LimN_2sunn_LimN_3 Mean (sunn_LimN)

Naoumkina et al., 2007 (http://www.ncbi.nlm.nih.gov/pubmed/17971436)
CS YE 0h control: Organ: cell suspension. Treatment Type: chemical treatment. Treatment: 0h under Yeast Elicitor (control)
Selection: CS_YE_0HR_CK_1CS_YE_0HR_CK_2 Mean (CS_YE_0HR_CK)

CS YE 2h control: Organ: cell suspension. Treatment Type: chemical treatment. Treatment: 2h (control)
Selection: CS_YE_2HR_CK_1CS_YE_2HR_CK_2 Mean (CS_YE_2HR_CK)

CS YE 2h: Organ: cell suspension. Treatment Type: chemical treatment. Treatment: 2h under Yeast Elicitor
Selection: CS_YE_2HR_1CS_YE_2HR_2 Mean (CS_YE_2HR)

CS YE 24h control: Organ: cell suspension. Treatment Type: chemical treatment. Treatment: 24h (control)
Selection: CS_YE_24HR_CK_1CS_YE_24HR_CK_2 Mean (CS_YE_24HR_CK)

CS YE 24h: Organ: cell suspension. Treatment Type: chemical treatment. Treatment: 24h under Yeast Elicitor
Selection: CS_YE_24HR_1CS_YE_24HR_2 Mean (CS_YE_24HR)

CS MJ 2h control: Organ: cell suspension. Treatment Type: chemical treatment. Treatment: 2h (control)
Selection: CS_MJ_2HR_CK_1CS_MJ_2HR_CK_2 Mean (CS_MJ_2HR_CK)

CS MJ 2h: Organ: cell suspension. Treatment Type: chemical treatment. Treatment: 2h under Methyl Jasmonate
Selection: CS_MJ_2HR_1CS_MJ_2HR_2 Mean (CS_MJ_2HR)

CS MJ 24h control: Organ: cell suspension. Treatment Type: chemical treatment. Treatment: 24h (control)
Selection: CS_MJ_24HR_CK_1CS_MJ_24HR_CK_2 Mean (CS_MJ_24HR_CK)

CS MJ 24h: Organ: cell suspension. Treatment Type: chemical treatment. Treatment: 24h under Methyl Jasmonate
Selection: CS_MJ_24HR_1CS_MJ_24HR_2 Mean (CS_MJ_24HR)

Naoumkina et al., 2008 (http://www.ncbi.nlm.nih.gov/pubmed/18433421)
Seeds transgenic R108 GuarMannSynt: Organ: seed. Treatment Type: mutants and transgenics. Treatment: 20-22dap seeds expressing the guar Mannan Syntase (from T0 plants)
Selection: Seeds_transgenic_R108_GuarMannSynt_1Seeds_transgenic_R108_GuarMannSynt_2Seeds_transgenic_R108_GuarMannSynt_3 Mean (Seeds_transgenic_R108_GuarMannSynt)

Seeds transgenic R108 (control): Organ: seed. Treatment Type: mutants and transgenics. Treatment: 20-22dap seeds (empty pCambia 2301 vector control) - from T0 plants
Selection: Seeds_transgenic_R108_emptyVec_1Seeds_transgenic_R108_emptyVec_2Seeds_transgenic_R108_emptyVec_3 Mean (Seeds_transgenic_R108_emptyVec)

Niebel et al. (unpublished)
Root A17 5d seedling - N-starved: Organ: root. Treatment Type: biological treatment. Treatment: Roots of 5 day-old seedlings harvested before inoculation by WT Sinorhiziobium meliloti (N-starved)
Selection: Root_A17_5d_seedling_N_starved_1Root_A17_5d_seedling_N_starved_2Root_A17_5d_seedling_N_starved_3 Mean (Root_A17_5d_seedling_N_starved)

Root A17 5d seedling - 24h Mock: Organ: root. Treatment Type: biological treatment. Treatment: Roots of 5 day-old seedlings 24 hours after Mock treatment
Selection: Root_A17_5d_seedling_24h_Mock_1Root_A17_5d_seedling_24h_Mock_2Root_A17_5d_seedling_24h_Mock_3 Mean (Root_A17_5d_seedling_24h_Mock)

Root A17 5d seedling - 24h Nod factor: Organ: root. Treatment Type: biological treatment. Treatment: Roots of 5 day-old seedlings 24 hours after 10-8M Nod Factor treatment
Selection: Root_A17_5d_seedling_24h_Nod_factor_1Root_A17_5d_seedling_24h_Nod_factor_2Root_A17_5d_seedling_24h_Nod_factor_3 Mean (Root_A17_5d_seedling_24h_Nod_factor)

Root A17 5d seedling - 1dpi Sinorhizobium: Organ: root. Treatment Type: biological treatment. Treatment: Roots of 5 day-old seedlings 1 day after inoculation by WT Sinorhiziobium meliloti
Selection: Root_A17_5d_seedling_1dpi_Sinorhizobium_1Root_A17_5d_seedling_1dpi_Sinorhizobium_2Root_A17_5d_seedling_1dpi_Sinorhizobium_3 Mean (Root_A17_5d_seedling_1dpi_Sinorhizobium)

Root A17 5d seedling - 3dpi Sinorhizobium: Organ: root. Treatment Type: biological treatment. Treatment: Roots of 5 day-old seedlings 3 days after inoculation by WT Sinorhiziobium meliloti
Selection: Root_A17_5d_seedling_3dpi_Sinorhizobium_1Root_A17_5d_seedling_3dpi_Sinorhizobium_2Root_A17_5d_seedling_3dpi_Sinorhizobium_3 Mean (Root_A17_5d_seedling_3dpi_Sinorhizobium)

Root efd 5d seedling - N-starved: Organ: root. Treatment Type: biological treatment. Treatment: Roots of 5 day-old seedlings harvested before inoculation by WT Sinorhiziobium meliloti (N-starved)
Selection: Root_efd_5d_seedling_N_starved_1Root_efd_5d_seedling_N_starved_2Root_efd_5d_seedling_N_starved_3 Mean (Root_efd_5d_seedling_N_starved)

Root ya1/hap2 5d seedling - (T0) non-inoculated (N-starved): Organ: root. Treatment Type: biological treatment. Treatment: Roots of 5 day-old seedlings harvested before inoculation by WT Sinorhiziobium meliloti (N-starved)
Selection: Root_ya1_hap2_5d_seedling_T0_non_inoculated_N_starved_1Root_ya1_hap2_5d_seedling_T0_non_inoculated_N_starved_2Root_ya1_hap2_5d_seedling_T0_non_inoculated_N_starved_3 Mean (Root_ya1_hap2_5d_seedling_T0_non_inoculated_N_starved)

Root ya1/hap2 5d seedling - 24h Mock: Organ: root. Treatment Type: biological treatment. Treatment: Roots of 5 day-old seedlings 24 hours after Mock treatment
Selection: Root_ya1_hap2_5d_seedling_24h_Mock_1Root_ya1_hap2_5d_seedling_24h_Mock_2Root_ya1_hap2_5d_seedling_24h_Mock_3 Mean (Root_ya1_hap2_5d_seedling_24h_Mock)

Root YA1/HAP2 5d seedling - 24h Nod factor: Organ: root. Treatment Type: biological treatment. Treatment: Roots of 5 day-old seedlings 24 hours after 10-8M Nod Factor treatment
Selection: Root_YA1_HAP2_5d_seedling_24h_Nod_factor_1Root_YA1_HAP2_5d_seedling_24h_Nod_factor_2Root_YA1_HAP2_5d_seedling_24h_Nod_factor_3 Mean (Root_YA1_HAP2_5d_seedling_24h_Nod_factor)

Root ya1/hap2 5d seedling - 1dpi Sinorhizobium: Organ: root. Treatment Type: biological treatment. Treatment: Roots of 5 day-old seedlings 1 day after inoculation by WT Sinorhiziobium meliloti
Selection: Root_ya1_hap2_5d_seedling_1dpi_Sinorhizobium_1Root_ya1_hap2_5d_seedling_1dpi_Sinorhizobium_2Root_ya1_hap2_5d_seedling_1dpi_Sinorhizobium_3 Mean (Root_ya1_hap2_5d_seedling_1dpi_Sinorhizobium)

Root ya1/hap2 5d seedling - 3dpi Sinorhizobium: Organ: root. Treatment Type: biological treatment. Treatment: Roots of 5 day-old seedlings 3 days after inoculation by WT Sinorhiziobium meliloti
Selection: Root_ya1_hap2_5d_seedling_3dpi_Sinorhizobium_1Root_ya1_hap2_5d_seedling_3dpi_Sinorhizobium_2Root_ya1_hap2_5d_seedling_3dpi_Sinorhizobium_3 Mean (Root_ya1_hap2_5d_seedling_3dpi_Sinorhizobium)

Root sunn-2 skl 5d seedling - 4h Mock: Organ: root. Treatment Type: biological treatment. Treatment: Roots of 5 day-old seedlings 4 hours after Mock treatment
Selection: Root_sunn_2_skl_5d_seedling_4h_Mock_1Root_sunn_2_skl_5d_seedling_4h_Mock_2Root_sunn_2_skl_5d_seedling_4h_Mock_3 Mean (Root_sunn_2_skl_5d_seedling_4h_Mock)

Root sunn-2 skl 5d seedling - 4h Nod factor: Organ: root. Treatment Type: biological treatment. Treatment: Roots of 5 day-old seedlings 4 hours after 10-8M Nod Factor treatment
Selection: Root_sunn_2_skl_5d_seedling_4h_Nod_factor_1Root_sunn_2_skl_5d_seedling_4h_Nod_factor_2Root_sunn_2_skl_5d_seedling_4h_Nod_factor_3 Mean (Root_sunn_2_skl_5d_seedling_4h_Nod_factor)

Root sunn-2 skl 5d seedling - 24h Mock: Organ: root. Treatment Type: biological treatment. Treatment: Roots of 5 day-old seedlings 24 hours after Mock treatment
Selection: Root_sunn_2_skl_5d_seedling_24h_Mock_1Root_sunn_2_skl_5d_seedling_24h_Mock_2Root_sunn_2_skl_5d_seedling_24h_Mock_3 Mean (Root_sunn_2_skl_5d_seedling_24h_Mock)

Root sunn-2 skl 5d seedling - 24h Nod factor: Organ: root. Treatment Type: biological treatment. Treatment: Roots of 5 day-old seedlings 24 hours after 10-8M Nod Factor treatment
Selection: Root_sunn_2_skl_5d_seedling_24h_Nod_factor_1Root_sunn_2_skl_5d_seedling_24h_Nod_factor_2Root_sunn_2_skl_5d_seedling_24h_Nod_factor_3 Mean (Root_sunn_2_skl_5d_seedling_24h_Nod_factor)

Nodule A17 (6dpi): Organ: nodule. Treatment Type: biological treatment. Treatment: young immature nodules 6dpi
Selection: Nodule_A17_6dpi_1Nodule_A17_6dpi_2Nodule_A17_6dpi_3 Mean (Nodule_A17_6dpi)

Nodule efd (6dpi): Organ: nodule. Treatment Type: biological treatment. Treatment: young immature nodules 6dpi
Selection: Nodule_efd_6dpi_1Nodule_efd_6dpi_2Nodule_efd_6dpi_3 Mean (Nodule_efd_6dpi)

Nodule ya1/hap2 (6dpi): Organ: nodule. Treatment Type: biological treatment. Treatment: young immature nodules 6dpi
Selection: Nodule_ya1_hap2_6dpi_1Nodule_ya1_hap2_6dpi_2Nodule_ya1_hap2_6dpi_3 Mean (Nodule_ya1_hap2_6dpi)

Ortu et al., 2012 (http://www.ncbi.nlm.nih.gov/pubmed/22451647)
Root A17 control: Organ: root. Treatment Type: biological treatment. Treatment: Control A17 roots
Selection: Root_A17_control_1Root_A17_control_2Root_A17_control_3 Mean (Root_A17_control)

Root DMI3 control: Organ: root. Treatment Type: biological treatment. Treatment: Control DMI3 roots
Selection: Root_DMI3_control_1Root_DMI3_control_2Root_DMI3_control_3 Mean (Root_DMI3_control)

HairyRoot WT Myc control: Organ: root. Treatment Type: biological treatment. Treatment: GFP-HDEL hairy root of WT (control)
Selection: HairyRoot_WT_Myc_CK_1HairyRoot_WT_Myc_CK_2HairyRoot_WT_Myc_CK_3 Mean (HairyRoot_WT_Myc_CK)

HairyRoot WT Myc Infected: Organ: root. Treatment Type: biological treatment. Treatment: GFP-HDEL hairy root of WT Sinorhizobium meliloti)
Selection: HairyRoot_WT_Myc_Infect_1HairyRoot_WT_Myc_Infect_2HairyRoot_WT_Myc_Infect_3 Mean (HairyRoot_WT_Myc_Infect)

HairyRoot DMI3 Myc control: Organ: root. Treatment Type: biological treatment. Treatment: GFP-HDEL hairy root of DMI3 (control)
Selection: HairyRoot_DMI3_Myc_CK_1HairyRoot_DMI3_Myc_CK_2HairyRoot_DMI3_Myc_CK_3 Mean (HairyRoot_DMI3_Myc_CK)

HairyRoot DMI3 Myc Infected: Organ: root. Treatment Type: biological treatment. Treatment: GFP-HDEL hairy root of DMI3 ( Sinorhizobium meliloti)
Selection: HairyRoot_DMI3_Myc_Infect_1HairyRoot_DMI3_Myc_Infect_2HairyRoot_DMI3_Myc_Infect_3 Mean (HairyRoot_DMI3_Myc_Infect)

Root A17 inoculated with Gigaspora (early contact): Organ: root. Treatment Type: biological treatment. Treatment: A17 roots inoculated with Gigaspora margarita at early-contact stages
Selection: Root_A17_inoculated_with_Gigaspora_early_contact_1Root_A17_inoculated_with_Gigaspora_early_contact_2Root_A17_inoculated_with_Gigaspora_early_contact_3 Mean (Root_A17_inoculated_with_Gigaspora_early_contact)

Root DMI3 inoculated with Gigaspora (early contact): Organ: root. Treatment Type: biological treatment. Treatment: DMI3 roots inoculated with Gigaspora margarita at early-contact stages
Selection: Root_DMI3_inoculated_with_Gigaspora_early_contact_1Root_DMI3_inoculated_with_Gigaspora_early_contact_2Root_DMI3_inoculated_with_Gigaspora_early_contact_3 Mean (Root_DMI3_inoculated_with_Gigaspora_early_contact)

Pang et al., 2008 (http://www.ncbi.nlm.nih.gov/pubmed/18772380)
Seed Coat: Organ: seed. Treatment Type: standard growth conditions. Treatment: 16-24dap seed coat
Selection: Seed_Coat_1Seed_Coat_2Seed_Coat_3 Mean (Seed_Coat)

Root transgenic GUS (TT2 control): Organ: root. Treatment Type: mutants and transgenics. Treatment: vector-control hairy roots (pCAMBIA2300)
Selection: RT_transgenic_GUS_TT2_CK_1RT_transgenic_GUS_TT2_CK_2 Mean (RT_transgenic_GUS_TT2_CK)

Root transgenic TT2: Organ: root. Treatment Type: mutants and transgenics. Treatment: AtTT2-expressing hairy roots (pCAMBIA2300)
Selection: RT_transgenic_TT2_1RT_transgenic_TT2_2 Mean (RT_transgenic_TT2)

Peel et al., 2009 (http://www.ncbi.nlm.nih.gov/pubmed/19368693)
Leaf MtLAP1: Organ: leaf. Treatment Type: mutants and transgenics. Treatment: OX_LAP1
Selection: Leaf_MtLAP1_1Leaf_MtLAP1_2Leaf_MtLAP1_3 Mean (Leaf_MtLAP1)

Leaf GUS-ox: Organ: leaf. Treatment Type: mutants and transgenics. Treatment: OX_GUS (control)
Selection: Leaf_MtGUS_1Leaf_MtGUS_2Leaf_MtGUS_3 Mean (Leaf_MtGUS)

Ratet P et al., (unpublished)
Root R108: Organ: root. Treatment Type: mutants and transgenics. Treatment: Wild-type, 18 days - induction - infection with symbiotic bacteria,sinorhizobium meliloti
Selection: RT_R108_1RT_R108_2RT_R108_3 Mean (RT_R108)

Nod R108: Organ: nodule. Treatment Type: mutants and transgenics. Treatment: Wild-type, 20 days - induction - infection with symbiotic bacteria,sinorhizobium meliloti
Selection: Nod_R108_1Nod_R108_2Nod_R108_3 Mean (Nod_R108)

Nod NOOT NF2717: Organ: nodule. Treatment Type: mutants and transgenics. Treatment: Noot (root nodule) mutant, 21days - induction - infection with symbiotic bacteria,sinorhizobium meliloti
Selection: NOOT_NF2717_1NOOT_NF2717_2 Mean (NOOT_NF2717)

Nod NOOT TNK507: Organ: nodule. Treatment Type: mutants and transgenics. Treatment: Noot (root nodule) mutant, 21days - induction - infection with symbiotic bacteria,sinorhizobium meliloti
Selection: Mean (NOOT_TNK507)

Rey et al., 2013 (http://www.ncbi.nlm.nih.gov/pubmed/23432463)
Root A17 mock: Organ: root. Treatment Type: biological treatment. Treatment: WT - mock
Selection: RT_A17_mock_1RT_A17_mock_2RT_A17_mock_3 Mean (RT_A17_mock)

Root nfp-2 mock: Organ: root. Treatment Type: biological treatment. Treatment: nfp1-2 mutant - mock
Selection: Mean (RT_nfp_2_mock)

Root A17 1dpi (Aphanomyes): Organ: root. Treatment Type: biological treatment. Treatment: WT - 1 dpi (Aphanomyes)
Selection: RT_A17_1dpi_1RT_A17_1dpi_2RT_A17_1dpi_3 Mean (RT_A17_1dpi)

Root nfp-2 1dpi (Aphanomyes): Organ: root. Treatment Type: biological treatment. Treatment: nfp1-2 mutant - 1 dpi (Aphanomyes)
Selection: Mean (RT_nfp_2_1dpi)

Rightmyer & Long, 2011 (http://www.ncbi.nlm.nih.gov/pubmed/21809981)
Root A17 buffer 1d: Organ: root. Treatment Type: chemical treatment. Treatment: roots buffer at 1d
Selection: RT_A17_buffer_1d_1RT_A17_buffer_1d_2RT_A17_buffer_1d_3 Mean (RT_A17_buffer_1d)

Root A17 buffer 7d: Organ: root. Treatment Type: chemical treatment. Treatment: roots buffer at 7d
Selection: RT_A17_buffer_7d_1RT_A17_buffer_7d_2RT_A17_buffer_7d_3 Mean (RT_A17_buffer_7d)

Root A17 NPA 1d: Organ: root. Treatment Type: chemical treatment. Treatment: roots NPA at 1d
Selection: RT_A17_NPA_1d_1RT_A17_NPA_1d_2RT_A17_NPA_1d_3 Mean (RT_A17_NPA_1d)

Root A17 NPA 7d: Organ: root. Treatment Type: chemical treatment. Treatment: roots NPA at 7d
Selection: RT_A17_NPA_7d_1RT_A17_NPA_7d_2RT_A17_NPA_7d_3 Mean (RT_A17_NPA_7d)

Root A17 TIBA 7d: Organ: root. Treatment Type: chemical treatment. Treatment: roots TIBA at 7d
Selection: RT_A17_TIBA_7d_1RT_A17_TIBA_7d_2RT_A17_TIBA_7d_3 Mean (RT_A17_TIBA_7d)

Root A17 TIBA 1d: Organ: root. Treatment Type: chemical treatment. Treatment: roots TIBA at 1d
Selection: RT_A17_TIBA_1d_1RT_A17_TIBA_1d_2RT_A17_TIBA_1d_3 Mean (RT_A17_TIBA_1d)

Ruffel et al., 2008 (http://www.ncbi.nlm.nih.gov/pubmed/18287487)
Shoot 5wk SuffNO3 NO3PAT: Organ: shoot (whole aerial system). Treatment Type: chemical treatment. Treatment: 5wk-old shoot (split root: sufficient NO3)
Selection: SHT_5WKS_SuffNO3_NO3PAT_1SHT_5WKS_SuffNO3_NO3PAT_2 Mean (SHT_5WKS_SuffNO3_NO3PAT)

Shoot 5wk LimtNO3 NO3PAE: Organ: shoot (whole aerial system). Treatment Type: chemical treatment. Treatment: 5wk-old shoot (split root: limited NO3)
Selection: SHT_5WKS_LimtNO3_NO3PAE_1SHT_5WKS_LimtNO3_NO3PAE_2 Mean (SHT_5WKS_LimtNO3_NO3PAE)

Shoot 5wk SuffNH4 NH4PAT: Organ: shoot (whole aerial system). Treatment Type: chemical treatment. Treatment: 5wk-old shoot (split root: sufficient NH4)
Selection: SHT_5WKS_SuffNH4_NH4PAT_1SHT_5WKS_SuffNH4_NH4PAT_2 Mean (SHT_5WKS_SuffNH4_NH4PAT)

Shoot 5wk LimtNH4 NH4PAE: Organ: shoot (whole aerial system). Treatment Type: chemical treatment. Treatment: 5wk-old shoot (split root: limited NH4)
Selection: SHT_5WKS_LimtNH4_NH4PAE_1SHT_5WKS_LimtNH4_NH4PAE_2 Mean (SHT_5WKS_LimtNH4_NH4PAE)

Shoot 5wk SuffN2 N2PAT: Organ: shoot (whole aerial system). Treatment Type: chemical treatment. Treatment: 5wk-old shoot (split root: sufficient N2)
Selection: SHT_5WKS_SuffN2_N2PAT_1SHT_5WKS_SuffN2_N2PAT_2 Mean (SHT_5WKS_SuffN2_N2PAT)

Shoot 5wk LimtN2 N2PAE: Organ: shoot (whole aerial system). Treatment Type: chemical treatment. Treatment: 5wk-old shoot (split root: limited N2)
Selection: SHT_5WKS_LimtN2_N2PAE_1SHT_5WKS_LimtN2_N2PAE_2 Mean (SHT_5WKS_LimtN2_N2PAE)

Root Nod 5wk SuffN2 N2S: Organ: root. Treatment Type: chemical treatment. Treatment: 5wk-old nodulated root (split root: sufficient N2)
Selection: RT_Nod_5WKS_SuffN2_N2S_1RT_Nod_5WKS_SuffN2_N2S_2 Mean (RT_Nod_5WKS_SuffN2_N2S)

Root Nod 5wk LimtN2 N2C: Organ: root. Treatment Type: chemical treatment. Treatment: 5wk-old nodulated root (split root: limited N2)
Selection: RT_Nod_5WKS_LimtN2_N2C_1RT_Nod_5WKS_LimtN2_N2C_2 Mean (RT_Nod_5WKS_LimtN2_N2C)

Root 5wk SuffNH4 NH4S: Organ: root. Treatment Type: chemical treatment. Treatment: 5wk-old root (split root: sufficient NH4)
Selection: RT_5WKS_SuffNH4_NH4S_1RT_5WKS_SuffNH4_NH4S_2 Mean (RT_5WKS_SuffNH4_NH4S)

Root 5wk LimtNH4 NH4C: Organ: root. Treatment Type: chemical treatment. Treatment: 5wk-old root (split root: limited NH4)
Selection: RT_5WKS_LimtNH4_NH4C_1RT_5WKS_LimtNH4_NH4C_2 Mean (RT_5WKS_LimtNH4_NH4C)

Root 5wk SuffNO3 NO3S: Organ: root. Treatment Type: chemical treatment. Treatment: 5wk-old root (split root: sufficient NO3)
Selection: RT_5WKS_SuffNO3_NO3S_1RT_5WKS_SuffNO3_NO3S_2 Mean (RT_5WKS_SuffNO3_NO3S)

Root 5wk LimtNO3 NO3C: Organ: root. Treatment Type: chemical treatment. Treatment: 5wk-old root (split root: limited NO3)
Selection: RT_5WKS_LimtNO3_NO3C_1RT_5WKS_LimtNO3_NO3C_2 Mean (RT_5WKS_LimtNO3_NO3C)

Root 5wk NoNO3 NO3ONE: Organ: root. Treatment Type: chemical treatment. Treatment: 5wk-old root (split root: no NO3)
Selection: RT_5WKS_NoNO3_NO3ONE_1RT_5WKS_NoNO3_NO3ONE_2 Mean (RT_5WKS_NoNO3_NO3ONE)

Seabra et al., 2012 (http://www.ncbi.nlm.nih.gov/pubmed/22414438)
Nodule (20d): Organ: nodule. Treatment Type: chemical treatment. Treatment: 20d-old nodule
Selection: Nodule_20d_1Nodule_20d_2Nodule_20d_3 Mean (Nodule_20d)

Nod phosphinothricin 0h: Organ: nodule. Treatment Type: chemical treatment. Treatment: 20 d old wild-type plants treated with phosphinothricin (PPT) 0h
Selection: Nod_phosphinothricin_0h_1Nod_phosphinothricin_0h_2Nod_phosphinothricin_0h_3 Mean (Nod_phosphinothricin_0h)

Nod phosphinothricin 4h: Organ: nodule. Treatment Type: chemical treatment. Treatment: 20 d old wild-type plants treated with phosphinothricin (PPT) 4h
Selection: Nod_phosphinothricin_4h_1Nod_phosphinothricin_4h_2Nod_phosphinothricin_4h_3 Mean (Nod_phosphinothricin_4h)

Nod phosphinothricin 8h: Organ: nodule. Treatment Type: chemical treatment. Treatment: 20 d old wild-type plants treated with phosphinothricin (PPT) 8h
Selection: Nod_phosphinothricin_8h_1Nod_phosphinothricin_8h_2Nod_phosphinothricin_8h_3 Mean (Nod_phosphinothricin_8h)

Nod phosphinothricin 24h: Organ: nodule. Treatment Type: chemical treatment. Treatment: 20 d old wild-type plants treated with phosphinothricin (PPT) 24h
Selection: Nod_phosphinothricin_24h_1Nod_phosphinothricin_24h_2Nod_phosphinothricin_24h_3 Mean (Nod_phosphinothricin_24h)

Nodule (20d) - 4h PPT: Organ: nodule. Treatment Type: chemical treatment. Treatment: 20d-old nodule 4 hours after PPT treatment
Selection: Nodule_20d_4h_PPT_1Nodule_20d_4h_PPT_2Nodule_20d_4h_PPT_3 Mean (Nodule_20d_4h_PPT)

Nodule (20d) - 8h PPT: Organ: nodule. Treatment Type: chemical treatment. Treatment: 20d-old nodule 8 hours after PPT treatment
Selection: Nodule_20d_8h_PPT_1Nodule_20d_8h_PPT_2Nodule_20d_8h_PPT_3 Mean (Nodule_20d_8h_PPT)

Nodule (20d) - 24h PPT: Organ: nodule. Treatment Type: chemical treatment. Treatment: 20d-old nodule 24 hours after PPT treatment
Selection: Nodule_20d_24h_PPT_1Nodule_20d_24h_PPT_2Nodule_20d_24h_PPT_3 Mean (Nodule_20d_24h_PPT)

Tadege et al., 2011 (http://www.ncbi.nlm.nih.gov/pubmed/21719692)
Shoot R108: Organ: shoot (whole aerial system). Treatment Type: mutants and transgenics. Treatment: Transcriptome profiling of wild-type 4 weeks shoot
Selection: SHT_R108_1SHT_R108_2SHT_R108_3 Mean (SHT_R108)

Shoot stenofolia: Organ: shoot (whole aerial system). Treatment Type: mutants and transgenics. Treatment: Transcriptome profiling of A WUSCHEL-like gene stenofolia mutant 4 weeks shoot
Selection: SHT_stenofolia_1SHT_stenofolia_2SHT_stenofolia_3 Mean (SHT_stenofolia)

Uppalapati et al., 2009 (http://www.ncbi.nlm.nih.gov/pubmed/19061398)
Leaf IRG1 R108: Organ: Leaf. Treatment Type: mutants and transgenics. Treatment: R108 leaf
Selection: LF_IRG1_R108_1LF_IRG1_R108_2LF_IRG1_R108_3 Mean (LF_IRG1_R108)

Leaf irg1-1: Organ: Leaf. Treatment Type: mutants and transgenics. Treatment: irg1 mutant leaf
Selection: LF_irg1_1_1LF_irg1_1_2 Mean (LF_irg1_1)

Leaf irg1-2: Organ: Leaf. Treatment Type: mutants and transgenics. Treatment: irg1 mutant leaf
Selection: LF_irg1_2_1LF_irg1_2_2 Mean (LF_irg1_2)

Leaf irg1-5: Organ: Leaf. Treatment Type: mutants and transgenics. Treatment: irg1 mutant leaf
Selection: LF_irg1_5_1LF_irg1_5_2 Mean (LF_irg1_5)

Root CRR 0hpi: Organ: root. Treatment Type: biological treatment. Treatment: 0h Phymatotrichum Root Rot infection (time-course)
Selection: RT_CRR_0hpi_1RT_CRR_0hpi_2RT_CRR_0hpi_3 Mean (RT_CRR_0hpi)

Root CRR 72hpi: Organ: root. Treatment Type: biological treatment. Treatment: 72h Phymatotrichum Root Rot infection (time-course)
Selection: RT_CRR_72hpi_1RT_CRR_72hpi_2RT_CRR_72hpi_3 Mean (RT_CRR_72hpi)

Root CRR 96hpi: Organ: root. Treatment Type: biological treatment. Treatment: 96h Phymatotrichum Root Rot infection (time-course)
Selection: RT_CRR_96hpi_1RT_CRR_96hpi_2RT_CRR_96hpi_3 Mean (RT_CRR_96hpi)

Wang et al. (unpublished)
Stem internode1: Organ: stem. Treatment Type: anatomy. Treatment: 1st internode (from shoot tip) of a 10-internode plant (~50d, not flowering, grown on soil in greenhouse)
Selection: Stem_internode1_1Stem_internode1_2Stem_internode1_3 Mean (Stem_internode1)

Stem internode2: Organ: stem. Treatment Type: anatomy. Treatment: 2nd internode (from shoot tip) of a 10-internode plant (~50d, not flowering, grown on soil in greenhouse)
Selection: Stem_internode2_1Stem_internode2_2Stem_internode2_3 Mean (Stem_internode2)

Stem internode4: Organ: stem. Treatment Type: anatomy. Treatment: 4th internode (from shoot tip) of a 10-internode plant (~50d, not flowering, grown on soil in greenhouse)
Selection: Stem_internode4_1Stem_internode4_2Stem_internode4_3 Mean (Stem_internode4)

Stem internode6: Organ: stem. Treatment Type: anatomy. Treatment: 6th internode (from shoot tip) of a 10-internode plant (~50d, not flowering, grown on soil in greenhouse)
Selection: Stem_internode6_1Stem_internode6_2Stem_internode6_3 Mean (Stem_internode6)

Stem internode8: Organ: stem. Treatment Type: anatomy. Treatment: 8th internode (from shoot tip) of a 10-internode plant (~50d, not flowering, grown on soil in greenhouse)
Selection: Stem_internode8_1Stem_internode8_2Stem_internode8_3 Mean (Stem_internode8)

Wang et al., 2010 (http://www.ncbi.nlm.nih.gov/pubmed/21135241)
Stem WT-STP R108: Organ: stem. Treatment Type: biological treatment. Treatment: WT
Selection: Stem_MTSTP_R108_1Stem_MTSTP_R108_2Stem_MTSTP_R108_3 Mean (Stem_MTSTP_R108)

Stem stp: Organ: stem. Treatment Type: biological treatment. Treatment: stp mutant
Selection: Stem_Mtstp_1Stem_Mtstp_2Stem_Mtstp_3 Mean (Stem_Mtstp)

Wang et al., 2011 (http://www.ncbi.nlm.nih.gov/pubmed/21883551)
Stem R108-NStem1-2: Organ: stem. Treatment Type: biological treatment. Treatment: WT-NST1-P
Selection: Stem_R108_NStem1_2_1Stem_R108_NStem1_2_2Stem_R108_NStem1_2_3 Mean (Stem_R108_NStem1_2)

Stem nStem1-2: Organ: stem. Treatment Type: biological treatment. Treatment: nts1-2
Selection: Stem_nStem1_2_1Stem_nStem1_2_2Stem_nStem1_2_3 Mean (Stem_nStem1_2)

Stem R108-NStem1-P: Organ: stem. Treatment Type: biological treatment. Treatment: WT-NST1-2
Selection: Stem_R108_NStem1_P_1Stem_R108_NStem1_P_2Stem_R108_NStem1_P_3 Mean (Stem_R108_NStem1_P)

Stem nStem1-p: Organ: stem. Treatment Type: biological treatment. Treatment: nts1-p
Selection: Stem_nStem1_p_1Stem_nStem1_p_2Stem_nStem1_p_3 Mean (Stem_nStem1_p)

Waston et al., unpublished
Root tip: Organ: root. Treatment Type: anatomy. Treatment: root tip (not border cells)
Selection: RT_tip_1RT_tip_2RT_tip_3 Mean (RT_tip)

Root Whole: Organ: root. Treatment Type: anatomy. Treatment: whole root
Selection: RT_Whole_1RT_Whole_2RT_Whole_3 Mean (RT_Whole)

Root Border cell: Organ: root. Treatment Type: anatomy. Treatment: root border cells
Selection: RT_BC_1RT_BC_2RT_BC_3 Mean (RT_BC)

Zhang et al. (unpublished)
Shoot drought 2d: Organ: shoot (whole aerial system). Treatment Type: physical treatments. Treatment: 2d drought stress (time-course)
Selection: SHT_drought_2d_1SHT_drought_2d_2SHT_drought_2d_3 Mean (SHT_drought_2d)

Shoot drought 3d: Organ: shoot (whole aerial system). Treatment Type: physical treatments. Treatment: 3d drought stress (time-course)
Selection: SHT_drought_3d_1SHT_drought_3d_2SHT_drought_3d_3 Mean (SHT_drought_3d)

Shoot drought 4d: Organ: shoot (whole aerial system). Treatment Type: physical treatments. Treatment: 4d drought stress (time-course)
Selection: SHT_drought_4d_1SHT_drought_4d_2SHT_drought_4d_3 Mean (SHT_drought_4d)

Shoot drought 7d: Organ: shoot (whole aerial system). Treatment Type: physical treatments. Treatment: 7d drought stress (time-course)
Selection: SHT_drought_7d_1SHT_drought_7d_2SHT_drought_7d_3 Mean (SHT_drought_7d)

Shoot drought 10d: Organ: shoot (whole aerial system). Treatment Type: physical treatments. Treatment: 10d drought stress (time-course)
Selection: SHT_drought_10d_1SHT_drought_10d_2SHT_drought_10d_3 Mean (SHT_drought_10d)

Shoot drought 14d: Organ: shoot (whole aerial system). Treatment Type: physical treatments. Treatment: 14d drought stress (time-course)
Selection: SHT_drought_14d_1SHT_drought_14d_2SHT_drought_14d_3 Mean (SHT_drought_14d)

Shoot drought 14d rewatered 1d: Organ: shoot (whole aerial system). Treatment Type: physical treatments. Treatment: 14d drought stress plus 1d rewatered (time-course)
Selection: SHT_drought_14d_rewatered_1d_1SHT_drought_14d_rewatered_1d_2SHT_drought_14d_rewatered_1d_3 Mean (SHT_drought_14d_rewatered_1d)

Shoot watered 2d: Organ: shoot (whole aerial system). Treatment Type: physical treatments. Treatment: 26-d well hydrated plants (control for drought experiment)
Selection: SHT_watered_2d_1SHT_watered_2d_2SHT_watered_2d_3 Mean (SHT_watered_2d)

Shoot watered 4d: Organ: shoot (whole aerial system). Treatment Type: physical treatments. Treatment: 28-d well hydrated plants (control for drought experiment)
Selection: SHT_watered_4d_1SHT_watered_4d_2SHT_watered_4d_3 Mean (SHT_watered_4d)

Root drought 2d: Organ: root. Treatment Type: physical treatments. Treatment: 2d drought stress (time-course)
Selection: RT_drought_2d_1RT_drought_2d_2RT_drought_2d_3 Mean (RT_drought_2d)

Root drought 3d: Organ: root. Treatment Type: physical treatments. Treatment: 3d drought stress (time-course)
Selection: RT_drought_3d_1RT_drought_3d_2RT_drought_3d_3 Mean (RT_drought_3d)

Root drought 4d: Organ: root. Treatment Type: physical treatments. Treatment: 4d drought stress (time-course)
Selection: RT_drought_4d_1RT_drought_4d_2RT_drought_4d_3 Mean (RT_drought_4d)

Root drought 7d: Organ: root. Treatment Type: physical treatments. Treatment: 7d drought stress (time-course)
Selection: RT_drought_7d_1RT_drought_7d_2RT_drought_7d_3 Mean (RT_drought_7d)

Root drought 10d: Organ: root. Treatment Type: physical treatments. Treatment: 10d drought stress (time-course)
Selection: RT_drought_10d_1RT_drought_10d_2RT_drought_10d_3 Mean (RT_drought_10d)

Root drought 14d: Organ: root. Treatment Type: physical treatments. Treatment: 14d drought stress (time-course)
Selection: RT_drought_14d_1RT_drought_14d_2RT_drought_14d_3 Mean (RT_drought_14d)

Root drought 14d rewatered 1d: Organ: root. Treatment Type: physical treatments. Treatment: 14d drought stress plus 1d rewatered (time-course)
Selection: RT_drought_14d_rewatered_1d_1RT_drought_14d_rewatered_1d_2RT_drought_14d_rewatered_1d_3 Mean (RT_drought_14d_rewatered_1d)

Root watered d2: Organ: root. Treatment Type: physical treatments. Treatment: 26-d well hydrated plants (control for drought experiment)
Selection: RT_watered_d2_1RT_watered_d2_2RT_watered_d2_3 Mean (RT_watered_d2)

Root watered 4d: Organ: root. Treatment Type: physical treatments. Treatment: 28-d well hydrated plants (control for drought experiment)
Selection: RT_watered_4d_1RT_watered_4d_2RT_watered_4d_3 Mean (RT_watered_4d)

Download Options:
Experiment Selection: All All Replicates All Means None
Probeset Selection: Mtr: Medicago truncatula only All, including Mtr, Msa, Sme and control
 
 
         
       
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