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      Medicago truncatula Gene Expression Atlas  

The team members of the Medicago truncatula Gene Atlas project and the Medicago truncatula Transcriptome Investigator would like to acknowledge the contributions of the following researchers in their listed publications, without which the web server would not be so successful. Lists below are not ordered.

Medicago truncatula Gene Expression Data
  • Benedito et al. (2008) Benedito VA, Torres-Jerez I, Murray JD, Andriankaja A, Allen S, Kakar K, Wandrey M, Verdier J, Zuber H, Ott T, Moreau S, Niebel A, Frickey T, Weiller G, He J, Dai X, Zhao PX, Tang Y, Udvardi MK. "A gene expression atlas of the model legume Medicago truncatula". Plant J.. 2008, 55(3):504--513.
  • Carelli et al. (2011) Carelli M, Biazzi E, Panara F, Tava A, Scaramelli L, Porceddu A, Graham N, Odoardi M, Piano E, Arcioni S, May S, Scotti C, Calderini O. "Medicago truncatula CYP716A12 is a multifunctional oxidase involved in the biosynthesis of hemolytic saponins". Plant Cell.. 2011, 23(8):3070-81.
  • Gaude et al. (2011) Gaude N, Bortfeld S, Duensing N, Lohse M, Krajinski F. "Arbuscule-containing and non-colonized cortical cells of mycorrhizal roots undergo extensive and specific reprogramming during arbuscular mycorrhizal development". Plant J.. 2012, 69(3):510-28.
  • Gomez et al. (2009) Gomez SK, Javot H, Deewatthanawong P, Torres-Jerez I, Tang Y, Blancaflor EB, Udvardi MK, Harrison MJ. "Medicago truncatula and Glomus intraradices gene expression in cortical cells harboring arbuscules in the arbuscular mycorrhizal symbiosis". BMC Plant Biol. 2009, 9:10.
  • Heath et al. (2012) Heath KD, Burke PV, Stinchcombe JR. "Coevolutionary genetic variation in the legume-rhizobium transcriptome". Mol Ecol.. 2012, 21(19):4735-47.
  • Hogekamp et al. (2011) Hogekamp C, Arndt D, Pereira PA, Becker JD, Hohnjec N, Küster H. "Laser microdissection unravels cell-type-specific transcription in arbuscular mycorrhizal roots, including CAAT-box transcription factor gene expression correlating with fungal contact and spread". Plant Physiol.. 2011, 157(4):2023-43.
  • Holmes et al. (2008) Holmes P, Goffard N, Weiller GF, Rolfe BG, Imin N. "Transcriptional profiling of Medicago truncatula meristematic root cells". BMC Plant Biol. 2008, 8:21.
  • Imin et al. (2008) Imin N, Goffard N, Nizamidin M, Rolfe BG. "Genome-wide transcriptional analysis of super-embryogenic Medicago truncatula explant cultures". BMC Plant Biol. 2008, 8:110.
  • Li et al. (2009) Li D, Su Z, Dong J, Wang T. "An expression database for roots of the model legume Medicago truncatula under salt stress". BMC Genomics. 2009, 10:517.
  • Mah et al. (2012) Mah KM, Uppalapatib SR, Tang YH, Allen S, Shuai B. "Gene expression profiling of Macrophomina phaseolina infected Medicago truncatula roots reveals a role for auxin in plant tolerance against the charcoal rot pathogen". Physiological and Molecular Plant Pathology 2012, 79:21-30.
  • Naoumkina et al. (2007) Naoumkina M, Vaghchhipawala S, Tang Y, Ben Y, Powell RJ, Dixon RA. "Different mechanisms for phytoalexin induction by pathogen and wound signals in Medicago truncatula". Proc Natl Acad Sci USA. 2007, 104(46):17909-15.
  • Naoumkina et al. (2008) Naoumkina M, Vaghchhipawala S, Tang Y, Ben Y, Powell RJ, Dixon RA. "Metabolic and genetic perturbations accompany the modification of galactomannan in seeds of Medicago truncatula expressing mannan synthase from guar (Cyamopsis tetragonoloba L.).". Plant Biotechnol J. 2008, 6(6):619-31.
  • Ortu et al. (2012) Ortu G, Balestrini R, Pereira PA, Becker JD, Küster H, Bonfante P. "Plant genes related to gibberellin biosynthesis and signaling are differentially regulated during the early stages of AM fungal interactions". Mol Plant. 2012, 5(4):951-4.
  • Pang et al. (2008) Pang Y, Peel GJ, Sharma SB, Tang Y, Dixon RA. "A transcript profiling approach reveals an epicatechin-specific glucosyltransferase expressed in the seed coat of Medicago truncatula". Proc Natl Acad Sci USA. 2008, 105(37):14210-5.
  • Peel et al. (2008) Peel GJ, Pang Y, Modolo LV, Dixon RA. "The LAP1 MYB transcription factor orchestrates anthocyanidin biosynthesis and glycosylation in Medicago". Plant J 2009, 59(1):136-49.
  • Rey et al. (2013) Rey T, Nars A, Bonhomme M, Bottin A, Huguet S, Balzergue S, Jardinaud MF, Bono JJ, Cullimore J, Dumas B, Gough C, Jacquet C. "NFP, a LysM protein controlling Nod factor perception, also intervenes in Medicago truncatula resistance to pathogens". New Phytol. 2013, 198(3):875-86.
  • Rightmyer et al. (2011) Rightmyer AP, Long SR. "Pseudonodule formation by wild-type and symbiotic mutant Medicago truncatula in response to auxin transport inhibitors". Mol Plant Microbe Interact. 2011, 24(11):1372-84.
  • Ruffel et al. (2008) Ruffel S, Freixes S, Balzergue S, Tillard P, Jeudy C, Martin-Magniette ML, van der Merwe MJ, Kakar K, Gouzy J, Fernie AR, Udvardi M, Salon C, Gojon A, Lepetit M. "Systemic signaling of the plant nitrogen status triggers specific transcriptome responses depending on the nitrogen source in Medicago truncatula". Plant Physiol. 2008, 146(4):2020-35.
  • Seabra et al. (2008) Seabra AR, Pereira PA, Becker JD, Carvalho HG. "Inhibition of glutamine synthetase by phosphinothricin leads to transcriptome reprograming in root nodules of Medicago truncatula". Mol Plant Microbe Interact. 2012, 25(7):976-92.
  • Tadege et al. (2008) Tadege M, Lin H, Bedair M, Berbel A, Wen J, Rojas CM, Niu L, Tang Y, Sumner L, Ratet P, McHale NA, Madueño F, Mysore KS. "STENOFOLIA regulates blade outgrowth and leaf vascular patterning in Medicago truncatula and Nicotiana sylvestris". Plant Cell. 2011, 23(6):2125-42.
  • Uppalapati et al. (2009) Uppalapati SR, Marek SM, Lee HK, Nakashima J, Tang Y, Sledge MK, Dixon RA, Mysore KS. "Global gene expression profiling during Medicago truncatula-Phymatotrichopsis omnivora interaction reveals a role for jasmonic acid, ethylene, and the flavonoid pathway in disease development". Mol Plant Microbe Interact. 2009, 22(1):7-17.
  • Wang et al. (2009) Wang H, Avci U, Nakashima J, Hahn MG, Chen F, Dixon RA. "Mutation of WRKY transcription factors initiates pith secondary wall formation and increases stem biomass in dicotyledonous plants". Proc Natl Acad Sci USA. 2010, 107(51):22338-43.
  • Wang et al. (2011) Wang H, Zhao Q, Chen F, Wang M, Dixon RA. "NAC domain function and transcriptional control of a secondary cell wall master switch". Plant J. 2011, 68(6):1104-14.
Medicago truncatula GeneChip and Genome Annotations
  • Goffard & Weiller (2007) Goffard N, Weiller G. "GeneBins: a database for classifying gene expression data, with application to plant genome arrays". BMC Bioinformatics 2007, 8:87.
  • Urbanczyk-Wochniak & Sumner (2007) Urbanczyk-Wochniak E., Sumner L.W. "MedicCyc: a biochemical pathway database for Medicago truncatula". Bioinformatics 2007, 23:1418-23.
  • Udvardi et al. (2007) Udvardi MK, Kakar K, Wandrey M, Montanari O, Murray J, Andriankaja A, Zhang JY, Benedito V, Hofer JM, Chueng F, Town CD. "Legume transcription factors: global regulators of plant development and response to the environment". Plant Physiol. 2007, 144(2):538-49.
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